Cluster: BrooksB_2017_SRR5405742_bin.5_CGC14
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405742_bin.5
- CGC Family ID: CGCFAM_04486
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_202 | 204043 | 205881 | + | 3.A.18.1.1 |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_203 | 205977 | 207371 | + | GH23 |
| NULL(UNKNOWN) | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_204 | 207427 | 207570 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_205 | 207618 | 208712 | - | TbpB_B_D |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_206 | 208872 | 211172 | + | 1.B.14.2.1 |
| pfam | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_207 | 211240 | 211557 | - | Ribosomal_S30AE |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_208 | 211799 | 213169 | - | 2.A.25.1.4 |
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_202
Type: TC
Location: 204043 - 205881 (+)
Type: TC
Location: 204043 - 205881 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_203
Type: CAZyme
Location: 205977 - 207371 (+)
Type: CAZyme
Location: 205977 - 207371 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_204
Type:
Location: 207427 - 207570 (+)
Type:
Location: 207427 - 207570 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_205
Type: pfam
Location: 207618 - 208712 (-)
Type: pfam
Location: 207618 - 208712 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_206
Type: TC
Location: 208872 - 211172 (+)
Type: TC
Location: 208872 - 211172 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_207
Type: pfam
Location: 211240 - 211557 (-)
Type: pfam
Location: 211240 - 211557 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_208
Type: TC
Location: 211799 - 213169 (-)
Type: TC
Location: 211799 - 213169 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_AC
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BrooksB_2017_SRR5405742_bin.5_k141_3139_203 | vegetarian > omnivore | 1.54376 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_3139_204 | vegetarian > omnivore | 1.58876 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_3139_204 | vegetarian > vegan | 1.02552 | 0.03878 |
| BrooksB_2017_SRR5405742_bin.5_k141_3139_207 | vegetarian > vegan | 1.10666 | 0.03878 |