Cluster: BrooksB_2017_SRR5405742_bin.5_CGC13
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405742_bin.5
- CGC Family ID: CGCFAM_00908
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_54 | 54835 | 55716 | + | 3.A.1.15.4 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_55 | 55716 | 56612 | + | 3.A.1.15.4 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_56 | 56616 | 57467 | + | 3.A.1.15.4 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_57 | 57460 | 58293 | + | 3.A.1.15.4 |
| pfam | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_58 | 58328 | 59500 | - | MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31 |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_3139 | BrooksB_2017_SRR5405742_bin.5_k141_3139_59 | 59497 | 60540 | - | GH3 |
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_54
Type: TC
Location: 54835 - 55716 (+)
Type: TC
Location: 54835 - 55716 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_55
Type: TC
Location: 55716 - 56612 (+)
Type: TC
Location: 55716 - 56612 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_56
Type: TC
Location: 56616 - 57467 (+)
Type: TC
Location: 56616 - 57467 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_57
Type: TC
Location: 57460 - 58293 (+)
Type: TC
Location: 57460 - 58293 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_58
Type: pfam
Location: 58328 - 59500 (-)
Type: pfam
Location: 58328 - 59500 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_3139_59
Type: CAZyme
Location: 59497 - 60540 (-)
Type: CAZyme
Location: 59497 - 60540 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_AC
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BrooksB_2017_SRR5405742_bin.5_k141_3139_56 | vegan > omnivore | 2.26816 | 0.00732 |
| BrooksB_2017_SRR5405742_bin.5_k141_3139_56 | vegetarian > omnivore | 1.45012 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_3139_57 | vegan > omnivore | 2.09483 | 0.00732 |
| BrooksB_2017_SRR5405742_bin.5_k141_3139_57 | vegetarian > omnivore | 1.30840 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_3139_58 | vegan > omnivore | 1.15914 | 0.00732 |
| BrooksB_2017_SRR5405742_bin.5_k141_3139_58 | vegetarian > omnivore | 1.07927 | 0.00460 |