Cluster: BrooksB_2017_SRR5405742_bin.5_CGC12
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405742_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_185 | 171290 | 171673 | - | 1.A.22.1.1 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_186 | 171752 | 173128 | - | 2.A.38.1.1 |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_187 | 173125 | 173940 | - | GT2 |
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_185
Type: TC
Location: 171290 - 171673 (-)
Type: TC
Location: 171290 - 171673 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_186
Type: TC
Location: 171752 - 173128 (-)
Type: TC
Location: 171752 - 173128 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_187
Type: CAZyme
Location: 173125 - 173940 (-)
Type: CAZyme
Location: 173125 - 173940 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_AC
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BrooksB_2017_SRR5405742_bin.5_k141_2708_185 | vegan > omnivore | 1.62436 | 0.00732 |
| BrooksB_2017_SRR5405742_bin.5_k141_2708_185 | vegetarian > omnivore | 3.11011 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_2708_185 | vegetarian > vegan | 1.48575 | 0.03878 |
| BrooksB_2017_SRR5405742_bin.5_k141_2708_186 | vegetarian > omnivore | 1.31498 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_2708_187 | vegan > omnivore | 1.51651 | 0.00732 |