Cluster: BrooksB_2017_SRR5405742_bin.5_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: BrooksB_2017_SRR5405742_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_97 | 104461 | 105591 | - | 1.B.1.3.3 |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_98 | 105757 | 106710 | - | GT9 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_99 | 106707 | 107612 | - | 2.A.7.3.58 |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_100 | 107609 | 108652 | - | GT9 |
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_97
Type: TC
Location: 104461 - 105591 (-)
Type: TC
Location: 104461 - 105591 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_98
Type: CAZyme
Location: 105757 - 106710 (-)
Type: CAZyme
Location: 105757 - 106710 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_99
Type: TC
Location: 106707 - 107612 (-)
Type: TC
Location: 106707 - 107612 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_100
Type: CAZyme
Location: 107609 - 108652 (-)
Type: CAZyme
Location: 107609 - 108652 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_AC
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BrooksB_2017_SRR5405742_bin.5_k141_2708_98 | vegan > omnivore | 1.02348 | 0.00732 |
| BrooksB_2017_SRR5405742_bin.5_k141_2708_98 | vegetarian > omnivore | 1.48539 | 0.00460 |