Cluster: BrooksB_2017_SRR5405742_bin.5_CGC10
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: BrooksB_2017_SRR5405742_bin.5
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_85 | 90827 | 91717 | + | 3.A.1.14.1 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_86 | 91717 | 92706 | + | 3.A.1.14.1 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_87 | 92706 | 93689 | + | 3.A.1.14.1 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_88 | 93689 | 94456 | + | 3.A.1.14.8 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_89 | 94667 | 95113 | + | 1.B.55.1.3 |
| TC | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_90 | 95144 | 97090 | + | 1.B.55.1.3 |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_91 | 97111 | 99027 | + | CE4 | GH153 |
| CAZyme | BrooksB_2017_SRR5405742_bin.5_k141_2708 | BrooksB_2017_SRR5405742_bin.5_k141_2708_92 | 99038 | 100279 | + | GT2 |
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_85
Type: TC
Location: 90827 - 91717 (+)
Type: TC
Location: 90827 - 91717 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_86
Type: TC
Location: 91717 - 92706 (+)
Type: TC
Location: 91717 - 92706 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_87
Type: TC
Location: 92706 - 93689 (+)
Type: TC
Location: 92706 - 93689 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_88
Type: TC
Location: 93689 - 94456 (+)
Type: TC
Location: 93689 - 94456 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_89
Type: TC
Location: 94667 - 95113 (+)
Type: TC
Location: 94667 - 95113 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_90
Type: TC
Location: 95144 - 97090 (+)
Type: TC
Location: 95144 - 97090 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_91
Type: CAZyme
Location: 97111 - 99027 (+)
Type: CAZyme
Location: 97111 - 99027 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_2708_92
Type: CAZyme
Location: 99038 - 100279 (+)
Type: CAZyme
Location: 99038 - 100279 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae_AC
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BrooksB_2017_SRR5405742_bin.5_k141_2708_85 | vegetarian > omnivore | 1.42665 | 0.00460 |
| BrooksB_2017_SRR5405742_bin.5_k141_2708_86 | vegetarian > omnivore | 1.43204 | 0.00460 |