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Cluster: BrooksB_2017_SRR5405742_bin.5_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_55 52311 53696 - 2.A.47.5.2
TC BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_56 53852 55078 - 2.A.1.12.1
TF BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_57 55252 55962 + GntR
pfam BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_58 55952 57025 + GFO_IDH_MocA | GFO_IDH_MocA_C | NAD_binding_3 | F420_oxidored | GFO_IDH_MocA_C3
CAZyme BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_59 57036 58142 + GH177
pfam BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_60 58219 58851 - PNPOx_N | PNP_phzG_C | Pyridox_oxase_2
TC BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_61 58918 60564 - 3.A.1.5.27
TC BrooksB_2017_SRR5405742_bin.5_k141_436 BrooksB_2017_SRR5405742_bin.5_k141_436_62 60698 62107 - 2.A.1.3.51
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_55
Type: TC
Location: 52311 - 53696 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_56
Type: TC
Location: 53852 - 55078 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_57
Type: TF
Location: 55252 - 55962 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_58
Type: pfam
Location: 55952 - 57025 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_59
Type: CAZyme
Location: 57036 - 58142 (+)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_60
Type: pfam
Location: 58219 - 58851 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_61
Type: TC
Location: 58918 - 60564 (-)
Gene ID: BrooksB_2017_SRR5405742_bin.5_k141_436_62
Type: TC
Location: 60698 - 62107 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
BrooksB_2017_SRR5405742_bin.5_k141_436_60 vegetarian > omnivore 1.01342 0.00460
BrooksB_2017_SRR5405742_bin.5_k141_436_61 vegan > omnivore 1.06168 0.00732

🧭 Explore Read Mapping of CGC

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