Cluster: BrooksB_2017_SRR5405686_bin.8_CGC6
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405686_bin.8
- CGC Family ID: CGCFAM_03611
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_20 | 19280 | 20329 | - | 1.A.35.3.2 |
| NULL(UNKNOWN) | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_21 | 20342 | 20674 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_22 | 20661 | 23039 | - | GT35 |
| pfam | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_23 | 23212 | 24264 | + | Dala_Dala_lig_N | ATP-grasp | ATP-grasp_3 | Dala_Dala_lig_C |
| pfam | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_24 | 24267 | 25631 | + | Mur_ligase | Mur_ligase_C | Mur_ligase_M |
| TC | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_25 | 25673 | 26506 | - | 3.A.1.24.6 |
| TC | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_26 | 26515 | 27198 | - | 3.A.1.24.4 |
| TC | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_27 | 27200 | 28165 | - | 3.A.1.24.5 |
| pfam | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_28 | 28167 | 28970 | - | DUF169 |
| TC | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_29 | 29003 | 29686 | - | 9.B.27.1.2 |
| TC | BrooksB_2017_SRR5405686_bin.8_k141_2835 | BrooksB_2017_SRR5405686_bin.8_k141_2835_30 | 29774 | 31039 | - | 2.A.23.1.5 |
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_20
Type: TC
Location: 19280 - 20329 (-)
Type: TC
Location: 19280 - 20329 (-)
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_21
Type:
Location: 20342 - 20674 (-)
Type:
Location: 20342 - 20674 (-)
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_22
Type: CAZyme
Location: 20661 - 23039 (-)
Type: CAZyme
Location: 20661 - 23039 (-)
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_23
Type: pfam
Location: 23212 - 24264 (+)
Type: pfam
Location: 23212 - 24264 (+)
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_24
Type: pfam
Location: 24267 - 25631 (+)
Type: pfam
Location: 24267 - 25631 (+)
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_25
Type: TC
Location: 25673 - 26506 (-)
Type: TC
Location: 25673 - 26506 (-)
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_26
Type: TC
Location: 26515 - 27198 (-)
Type: TC
Location: 26515 - 27198 (-)
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_27
Type: TC
Location: 27200 - 28165 (-)
Type: TC
Location: 27200 - 28165 (-)
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_28
Type: pfam
Location: 28167 - 28970 (-)
Type: pfam
Location: 28167 - 28970 (-)
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_29
Type: TC
Location: 29003 - 29686 (-)
Type: TC
Location: 29003 - 29686 (-)
Gene ID: BrooksB_2017_SRR5405686_bin.8_k141_2835_30
Type: TC
Location: 29774 - 31039 (-)
Type: TC
Location: 29774 - 31039 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Tissierellales
Family
Peptoniphilaceae
Genus
Finegoldia
Species
Finegoldia magna_I
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.