Cluster: BrooksB_2017_SRR5405658_bin.3_CGC8
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 2
- Substrate:
- Genome ID: BrooksB_2017_SRR5405658_bin.3
- CGC Family ID: CGCFAM_02150
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_53 | 62256 | 65150 | + | 3.A.3.1.8 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_54 | 65147 | 65800 | + | 3.A.3.1.8 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_55 | 65814 | 66482 | + | 3.A.3.1.8 |
| CAZyme | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_56 | 66661 | 67818 | - | GT28 |
| pfam | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_57 | 68227 | 69942 | + | VanW | G5 | PG_binding_4 |
| CAZyme | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_58 | 70042 | 71034 | + | GT2 |
| pfam | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_59 | 71155 | 73053 | + | CN_hydrolase | NAD_synthase |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_60 | 73138 | 74565 | + | 2.A.25.1.9 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_61 | 74924 | 75952 | + | 3.A.1.24.2 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_62 | 75942 | 76604 | + | 3.A.1.24.5 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_10606 | BrooksB_2017_SRR5405658_bin.3_k141_10606_63 | 76638 | 77486 | + | 3.A.1.24.5 |
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_53
Type: TC
Location: 62256 - 65150 (+)
Type: TC
Location: 62256 - 65150 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_54
Type: TC
Location: 65147 - 65800 (+)
Type: TC
Location: 65147 - 65800 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_55
Type: TC
Location: 65814 - 66482 (+)
Type: TC
Location: 65814 - 66482 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_56
Type: CAZyme
Location: 66661 - 67818 (-)
Type: CAZyme
Location: 66661 - 67818 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_57
Type: pfam
Location: 68227 - 69942 (+)
Type: pfam
Location: 68227 - 69942 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_58
Type: CAZyme
Location: 70042 - 71034 (+)
Type: CAZyme
Location: 70042 - 71034 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_59
Type: pfam
Location: 71155 - 73053 (+)
Type: pfam
Location: 71155 - 73053 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_60
Type: TC
Location: 73138 - 74565 (+)
Type: TC
Location: 73138 - 74565 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_61
Type: TC
Location: 74924 - 75952 (+)
Type: TC
Location: 74924 - 75952 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_62
Type: TC
Location: 75942 - 76604 (+)
Type: TC
Location: 75942 - 76604 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_10606_63
Type: TC
Location: 76638 - 77486 (+)
Type: TC
Location: 76638 - 77486 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.