Cluster: BrooksB_2017_SRR5405658_bin.3_CGC21
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405658_bin.3
- CGC Family ID: CGCFAM_01683
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13981 | BrooksB_2017_SRR5405658_bin.3_k141_13981_275 | 253581 | 254990 | + | 2.A.6.4.2 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13981 | BrooksB_2017_SRR5405658_bin.3_k141_13981_276 | 254987 | 255949 | + | 2.A.6.4.2 |
| pfam | BrooksB_2017_SRR5405658_bin.3_k141_13981 | BrooksB_2017_SRR5405658_bin.3_k141_13981_277 | 256202 | 257119 | + | TraX |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13981 | BrooksB_2017_SRR5405658_bin.3_k141_13981_278 | 257288 | 258532 | - | 2.A.1.2.7 |
| CAZyme | BrooksB_2017_SRR5405658_bin.3_k141_13981 | BrooksB_2017_SRR5405658_bin.3_k141_13981_279 | 258913 | 260100 | - | GT4 |
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13981_275
Type: TC
Location: 253581 - 254990 (+)
Type: TC
Location: 253581 - 254990 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13981_276
Type: TC
Location: 254987 - 255949 (+)
Type: TC
Location: 254987 - 255949 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13981_277
Type: pfam
Location: 256202 - 257119 (+)
Type: pfam
Location: 256202 - 257119 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13981_278
Type: TC
Location: 257288 - 258532 (-)
Type: TC
Location: 257288 - 258532 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13981_279
Type: CAZyme
Location: 258913 - 260100 (-)
Type: CAZyme
Location: 258913 - 260100 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.