Cluster: BrooksB_2017_SRR5405658_bin.3_CGC20
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: BrooksB_2017_SRR5405658_bin.3
- CGC Family ID: CGCFAM_00041
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BrooksB_2017_SRR5405658_bin.3_k141_13981 | BrooksB_2017_SRR5405658_bin.3_k141_13981_263 | 239865 | 241025 | - | GH105 |
| CAZyme | BrooksB_2017_SRR5405658_bin.3_k141_13981 | BrooksB_2017_SRR5405658_bin.3_k141_13981_264 | 241022 | 242557 | - | GH28 |
| pfam | BrooksB_2017_SRR5405658_bin.3_k141_13981 | BrooksB_2017_SRR5405658_bin.3_k141_13981_265 | 242567 | 242980 | - | RDD |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13981 | BrooksB_2017_SRR5405658_bin.3_k141_13981_266 | 243097 | 243957 | - | 3.A.1.1.11 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13981 | BrooksB_2017_SRR5405658_bin.3_k141_13981_267 | 243970 | 244845 | - | 3.A.1.1.11 |
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13981_263
Type: CAZyme
Location: 239865 - 241025 (-)
Type: CAZyme
Location: 239865 - 241025 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13981_264
Type: CAZyme
Location: 241022 - 242557 (-)
Type: CAZyme
Location: 241022 - 242557 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13981_265
Type: pfam
Location: 242567 - 242980 (-)
Type: pfam
Location: 242567 - 242980 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13981_266
Type: TC
Location: 243097 - 243957 (-)
Type: TC
Location: 243097 - 243957 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13981_267
Type: TC
Location: 243970 - 244845 (-)
Type: TC
Location: 243970 - 244845 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.