Cluster: BrooksB_2017_SRR5405658_bin.3_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405658_bin.3
- CGC Family ID: CGCFAM_02149
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_58 | 60263 | 61069 | + | CE4 |
| pfam | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_59 | 61513 | 62175 | + | Methyltransf_4 | Methyltransf_25 | Methyltransf_31 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_60 | 62548 | 63726 | + | 3.A.1.4.10 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_61 | 63808 | 64689 | + | 3.A.1.4.10 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_62 | 64706 | 65713 | + | 3.A.1.4.10 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_63 | 65717 | 66478 | + | 3.A.1.4.10 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_64 | 66480 | 67193 | + | 3.A.1.4.10 |
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_58
Type: CAZyme
Location: 60263 - 61069 (+)
Type: CAZyme
Location: 60263 - 61069 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_59
Type: pfam
Location: 61513 - 62175 (+)
Type: pfam
Location: 61513 - 62175 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_60
Type: TC
Location: 62548 - 63726 (+)
Type: TC
Location: 62548 - 63726 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_61
Type: TC
Location: 63808 - 64689 (+)
Type: TC
Location: 63808 - 64689 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_62
Type: TC
Location: 64706 - 65713 (+)
Type: TC
Location: 64706 - 65713 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_63
Type: TC
Location: 65717 - 66478 (+)
Type: TC
Location: 65717 - 66478 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_64
Type: TC
Location: 66480 - 67193 (+)
Type: TC
Location: 66480 - 67193 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.