Cluster: BrooksB_2017_SRR5405658_bin.3_CGC16
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405658_bin.3
- CGC Family ID: CGCFAM_01706
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_3 | 3454 | 4119 | + | 2.A.38.1.1 |
| pfam | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_4 | 4273 | 4809 | + | QueT |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_5 | 4834 | 6219 | + | 2.A.38.4.3 |
| pfam | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_6 | 6457 | 7224 | - | DUF1980 | DUF1980_C |
| pfam | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_7 | 7230 | 8789 | - | cobW | ArsP_1 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_8 | 8794 | 9768 | - | 9.B.10.1.1 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_9 | 9788 | 10567 | - | 3.A.1.15.11 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_10 | 10727 | 11473 | - | 3.A.1.15.8 |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_11 | 11520 | 12485 | - | 3.A.1.15.11 |
| CAZyme | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_12 | 12589 | 13575 | - | GH109 |
| NULL(UNKNOWN) | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_13 | 13883 | 14026 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_13000 | BrooksB_2017_SRR5405658_bin.3_k141_13000_14 | 14598 | 17285 | + | 3.A.3.2.21 |
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_3
Type: TC
Location: 3454 - 4119 (+)
Type: TC
Location: 3454 - 4119 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_4
Type: pfam
Location: 4273 - 4809 (+)
Type: pfam
Location: 4273 - 4809 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_5
Type: TC
Location: 4834 - 6219 (+)
Type: TC
Location: 4834 - 6219 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_6
Type: pfam
Location: 6457 - 7224 (-)
Type: pfam
Location: 6457 - 7224 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_7
Type: pfam
Location: 7230 - 8789 (-)
Type: pfam
Location: 7230 - 8789 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_8
Type: TC
Location: 8794 - 9768 (-)
Type: TC
Location: 8794 - 9768 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_9
Type: TC
Location: 9788 - 10567 (-)
Type: TC
Location: 9788 - 10567 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_10
Type: TC
Location: 10727 - 11473 (-)
Type: TC
Location: 10727 - 11473 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_11
Type: TC
Location: 11520 - 12485 (-)
Type: TC
Location: 11520 - 12485 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_12
Type: CAZyme
Location: 12589 - 13575 (-)
Type: CAZyme
Location: 12589 - 13575 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_13
Type:
Location: 13883 - 14026 (+)
Type:
Location: 13883 - 14026 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_13000_14
Type: TC
Location: 14598 - 17285 (+)
Type: TC
Location: 14598 - 17285 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.