Cluster: BrooksB_2017_SRR5405658_bin.3_CGC14
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: BrooksB_2017_SRR5405658_bin.3
- CGC Family ID: CGCFAM_05176
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BrooksB_2017_SRR5405658_bin.3_k141_12095 | BrooksB_2017_SRR5405658_bin.3_k141_12095_40 | 44120 | 45484 | + | 2.A.3.8.12 |
| pfam | BrooksB_2017_SRR5405658_bin.3_k141_12095 | BrooksB_2017_SRR5405658_bin.3_k141_12095_41 | 45503 | 46357 | + | ADP_ribosyl_GH |
| NULL(UNKNOWN) | BrooksB_2017_SRR5405658_bin.3_k141_12095 | BrooksB_2017_SRR5405658_bin.3_k141_12095_42 | 46354 | 46821 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_12095 | BrooksB_2017_SRR5405658_bin.3_k141_12095_43 | 46903 | 48267 | + | 2.A.26.1.9 |
| pfam | BrooksB_2017_SRR5405658_bin.3_k141_12095 | BrooksB_2017_SRR5405658_bin.3_k141_12095_44 | 48333 | 49205 | - | DegV |
| TF | BrooksB_2017_SRR5405658_bin.3_k141_12095 | BrooksB_2017_SRR5405658_bin.3_k141_12095_45 | 49575 | 49943 | + | GntR |
| TC | BrooksB_2017_SRR5405658_bin.3_k141_12095 | BrooksB_2017_SRR5405658_bin.3_k141_12095_46 | 49943 | 50641 | + | 3.A.1.132.6 |
| NULL(UNKNOWN) | BrooksB_2017_SRR5405658_bin.3_k141_12095 | BrooksB_2017_SRR5405658_bin.3_k141_12095_47 | 50635 | 51420 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | BrooksB_2017_SRR5405658_bin.3_k141_12095 | BrooksB_2017_SRR5405658_bin.3_k141_12095_48 | 51680 | 54640 | + | GH24 |
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_12095_40
Type: TC
Location: 44120 - 45484 (+)
Type: TC
Location: 44120 - 45484 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_12095_41
Type: pfam
Location: 45503 - 46357 (+)
Type: pfam
Location: 45503 - 46357 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_12095_42
Type:
Location: 46354 - 46821 (+)
Type:
Location: 46354 - 46821 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_12095_43
Type: TC
Location: 46903 - 48267 (+)
Type: TC
Location: 46903 - 48267 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_12095_44
Type: pfam
Location: 48333 - 49205 (-)
Type: pfam
Location: 48333 - 49205 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_12095_45
Type: TF
Location: 49575 - 49943 (+)
Type: TF
Location: 49575 - 49943 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_12095_46
Type: TC
Location: 49943 - 50641 (+)
Type: TC
Location: 49943 - 50641 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_12095_47
Type:
Location: 50635 - 51420 (+)
Type:
Location: 50635 - 51420 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_12095_48
Type: CAZyme
Location: 51680 - 54640 (+)
Type: CAZyme
Location: 51680 - 54640 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota_A
Class
Clostridia
Order
Oscillospirales
Family
Acutalibacteraceae
Genus
Clostridium_E
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.