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Cluster: BrooksB_2017_SRR5405658_bin.3_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_156 153697 155823 - CBM50
TC BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_157 156071 157081 - 9.A.11.1.1
TC BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_158 157097 157543 - 9.A.11.1.1
pfam BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_159 157848 159359 - PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
TC BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_160 159504 160181 + 3.A.1.122.14
NULL(UNKNOWN) BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_161 160265 160516 + NULL(UNKNOWN)
[View Structural Homologs]
TC BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_162 160626 161579 + 3.A.11.1.4
TC BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_163 161785 162633 - 3.A.1.3.14
NULL(UNKNOWN) BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_164 162813 163778 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_165 164076 165401 - GH1
CAZyme BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_166 165455 167884 - GH94
TF BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_167 168392 169405 + LacI
NULL(UNKNOWN) BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_168 169507 170895 + NULL(UNKNOWN)
[View Structural Homologs]
TC BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_169 171015 172001 + 3.A.1.1.4
TC BrooksB_2017_SRR5405658_bin.3_k141_4856 BrooksB_2017_SRR5405658_bin.3_k141_4856_170 171998 172861 + 3.A.1.1.48
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_156
Type: CAZyme
Location: 153697 - 155823 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_157
Type: TC
Location: 156071 - 157081 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_158
Type: TC
Location: 157097 - 157543 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_159
Type: pfam
Location: 157848 - 159359 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_160
Type: TC
Location: 159504 - 160181 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_161
Type:
Location: 160265 - 160516 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_162
Type: TC
Location: 160626 - 161579 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_163
Type: TC
Location: 161785 - 162633 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_164
Type:
Location: 162813 - 163778 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_165
Type: CAZyme
Location: 164076 - 165401 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_166
Type: CAZyme
Location: 165455 - 167884 (-)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_167
Type: TF
Location: 168392 - 169405 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_168
Type:
Location: 169507 - 170895 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_169
Type: TC
Location: 171015 - 172001 (+)
Gene ID: BrooksB_2017_SRR5405658_bin.3_k141_4856_170
Type: TC
Location: 171998 - 172861 (+)

Taxonomic Lineage

Domain
Bacteria
→
Phylum
Bacillota_A
→
Class
Clostridia
→
Order
Oscillospirales
→
Family
Acutalibacteraceae
→
Genus
Clostridium_E
→

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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