Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC63
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_1 | 206 | 886 | - | 1.B.35.1.5 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_2 | 1304 | 2485 | - | Thiolase_N | ketoacyl-synt | Thiolase_C |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_3 | 2641 | 3453 | - | 3.A.1.24.2 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_4 | 3472 | 4140 | - | 3.A.1.24.2 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_5 | 4133 | 5155 | - | 3.A.1.24.2 |
| STP | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_6 | 5551 | 6519 | + | PALP |
| STP | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_7 | 6545 | 7687 | + | Aminotran_1_2 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_8 | 7698 | 9032 | - | 9.B.34.1.3 |
| NULL(UNKNOWN) | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_9 | 10099 | 10425 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_10 | 10571 | 12685 | + | GT2 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_11 | 12675 | 14981 | + | 4.D.3.1.6 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_12 | 14978 | 18655 | + | 1.B.55.3.1 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_1
Type: TC
Location: 206 - 886 (-)
Type: TC
Location: 206 - 886 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_2
Type: pfam
Location: 1304 - 2485 (-)
Type: pfam
Location: 1304 - 2485 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_3
Type: TC
Location: 2641 - 3453 (-)
Type: TC
Location: 2641 - 3453 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_4
Type: TC
Location: 3472 - 4140 (-)
Type: TC
Location: 3472 - 4140 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_5
Type: TC
Location: 4133 - 5155 (-)
Type: TC
Location: 4133 - 5155 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_6
Type: STP
Location: 5551 - 6519 (+)
Type: STP
Location: 5551 - 6519 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_7
Type: STP
Location: 6545 - 7687 (+)
Type: STP
Location: 6545 - 7687 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_8
Type: TC
Location: 7698 - 9032 (-)
Type: TC
Location: 7698 - 9032 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_9
Type:
Location: 10099 - 10425 (+)
Type:
Location: 10099 - 10425 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_10
Type: CAZyme
Location: 10571 - 12685 (+)
Type: CAZyme
Location: 10571 - 12685 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_11
Type: TC
Location: 12675 - 14981 (+)
Type: TC
Location: 12675 - 14981 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8946_12
Type: TC
Location: 14978 - 18655 (+)
Type: TC
Location: 14978 - 18655 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.