Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC60
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_17 | 15844 | 16698 | + | 9.B.125.1.1 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_18 | 16714 | 17664 | - | GH43_26 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_19 | 17664 | 19070 | - | 2.A.2.3.4 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_20 | 19244 | 20614 | - | 2.A.3.1.3 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_17
Type: TC
Location: 15844 - 16698 (+)
Type: TC
Location: 15844 - 16698 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_18
Type: CAZyme
Location: 16714 - 17664 (-)
Type: CAZyme
Location: 16714 - 17664 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_19
Type: TC
Location: 17664 - 19070 (-)
Type: TC
Location: 17664 - 19070 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_20
Type: TC
Location: 19244 - 20614 (-)
Type: TC
Location: 19244 - 20614 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_18 | vegan > omnivore | 4.20724 | 0.00243 |
| Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_18 | vegetarian > omnivore | 3.85112 | 0.04105 |
| Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8446_19 | vegetarian > omnivore | 1.48856 | 0.04105 |