Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC57
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 10
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- CGC Family ID: CGCFAM_00698
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_22 | 21155 | 22432 | - | GT30 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_23 | 22871 | 23869 | + | GT9 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_24 | 23869 | 24993 | + | GT4 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_25 | 24986 | 25783 | + | Kdo |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_26 | 25803 | 26897 | + | GT4 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_27 | 26894 | 27910 | + | GT8 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_28 | 27931 | 28953 | + | GT8 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_29 | 28974 | 29672 | + | ABC1 | WaaY |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_30 | 29762 | 30619 | + | GT73 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_31 | 30646 | 31728 | + | GT9 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_32 | 31763 | 33019 | - | 9.B.67.5.1 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_33 | 33030 | 33989 | - | GT9 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_34 | 33993 | 35039 | - | GT9 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_22
Type: CAZyme
Location: 21155 - 22432 (-)
Type: CAZyme
Location: 21155 - 22432 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_23
Type: CAZyme
Location: 22871 - 23869 (+)
Type: CAZyme
Location: 22871 - 23869 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_24
Type: CAZyme
Location: 23869 - 24993 (+)
Type: CAZyme
Location: 23869 - 24993 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_25
Type: pfam
Location: 24986 - 25783 (+)
Type: pfam
Location: 24986 - 25783 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_26
Type: CAZyme
Location: 25803 - 26897 (+)
Type: CAZyme
Location: 25803 - 26897 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_27
Type: CAZyme
Location: 26894 - 27910 (+)
Type: CAZyme
Location: 26894 - 27910 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_28
Type: CAZyme
Location: 27931 - 28953 (+)
Type: CAZyme
Location: 27931 - 28953 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_29
Type: pfam
Location: 28974 - 29672 (+)
Type: pfam
Location: 28974 - 29672 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_30
Type: CAZyme
Location: 29762 - 30619 (+)
Type: CAZyme
Location: 29762 - 30619 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_31
Type: CAZyme
Location: 30646 - 31728 (+)
Type: CAZyme
Location: 30646 - 31728 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_32
Type: TC
Location: 31763 - 33019 (-)
Type: TC
Location: 31763 - 33019 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_33
Type: CAZyme
Location: 33030 - 33989 (-)
Type: CAZyme
Location: 33030 - 33989 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_8335_34
Type: CAZyme
Location: 33993 - 35039 (-)
Type: CAZyme
Location: 33993 - 35039 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.