Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC53
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- CGC Family ID: CGCFAM_03484
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_10 | 5431 | 6570 | + | CBM50 |
| STP | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_11 | 6697 | 7689 | + | Sigma70_r2 | Sigma70_r3 | Sigma70_r4 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_12 | 7743 | 8123 | - | SnoaL_3 | DUF4440 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_13 | 8132 | 9328 | - | 2.A.1.3.51 |
| TF | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_14 | 9437 | 10342 | + | HTH_1 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_15 | 10368 | 12929 | - | MutS_V | MutS_I | MutS_II | MutS_IV | MutS_III |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_16 | 13825 | 15399 | + | 1.B.52.2.1 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_10
Type: CAZyme
Location: 5431 - 6570 (+)
Type: CAZyme
Location: 5431 - 6570 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_11
Type: STP
Location: 6697 - 7689 (+)
Type: STP
Location: 6697 - 7689 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_12
Type: pfam
Location: 7743 - 8123 (-)
Type: pfam
Location: 7743 - 8123 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_13
Type: TC
Location: 8132 - 9328 (-)
Type: TC
Location: 8132 - 9328 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_14
Type: TF
Location: 9437 - 10342 (+)
Type: TF
Location: 9437 - 10342 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_15
Type: pfam
Location: 10368 - 12929 (-)
Type: pfam
Location: 10368 - 12929 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_7966_16
Type: TC
Location: 13825 - 15399 (+)
Type: TC
Location: 13825 - 15399 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.