Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC44
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_12 | 13328 | 13795 | + | 3.D.1.9.2 |
| STP | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_13 | 13802 | 15100 | - | Aminotran_1_2 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_14 | 15195 | 17231 | - | GH13_19 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_15 | 17549 | 18376 | + | GH73 |
| TF | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_16 | 18425 | 19603 | - | HTH_AraC | HTH_AraC |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_17 | 19706 | 20887 | - | 3.A.1.2.4 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_18 | 20865 | 22406 | - | 3.A.1.2.4 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_19 | 22494 | 23486 | - | 3.A.1.2.4 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_12
Type: TC
Location: 13328 - 13795 (+)
Type: TC
Location: 13328 - 13795 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_13
Type: STP
Location: 13802 - 15100 (-)
Type: STP
Location: 13802 - 15100 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_14
Type: CAZyme
Location: 15195 - 17231 (-)
Type: CAZyme
Location: 15195 - 17231 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_15
Type: CAZyme
Location: 17549 - 18376 (+)
Type: CAZyme
Location: 17549 - 18376 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_16
Type: TF
Location: 18425 - 19603 (-)
Type: TF
Location: 18425 - 19603 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_17
Type: TC
Location: 19706 - 20887 (-)
Type: TC
Location: 19706 - 20887 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_18
Type: TC
Location: 20865 - 22406 (-)
Type: TC
Location: 20865 - 22406 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_6447_19
Type: TC
Location: 22494 - 23486 (-)
Type: TC
Location: 22494 - 23486 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.