Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC40
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 1
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- CGC Family ID: CGCFAM_00891
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_5 | 3731 | 5014 | + | CE8 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_6 | 5082 | 6077 | - | Lactonase |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_7 | 6233 | 7051 | + | Hydrolase | S6PP | Hydrolase_3 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_8 | 7052 | 8110 | - | 3.A.1.8.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_9 | 8114 | 8803 | - | 3.A.1.8.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_10 | 8800 | 9576 | - | 3.A.1.8.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_11 | 9754 | 9945 | - | 2.A.6.2.49 |
| TF | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_12 | 10052 | 10840 | + | HTH_1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_13 | 10908 | 12377 | + | 3.A.1.26.3 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_5
Type: CAZyme
Location: 3731 - 5014 (+)
Type: CAZyme
Location: 3731 - 5014 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_6
Type: pfam
Location: 5082 - 6077 (-)
Type: pfam
Location: 5082 - 6077 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_7
Type: pfam
Location: 6233 - 7051 (+)
Type: pfam
Location: 6233 - 7051 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_8
Type: TC
Location: 7052 - 8110 (-)
Type: TC
Location: 7052 - 8110 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_9
Type: TC
Location: 8114 - 8803 (-)
Type: TC
Location: 8114 - 8803 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_10
Type: TC
Location: 8800 - 9576 (-)
Type: TC
Location: 8800 - 9576 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_11
Type: TC
Location: 9754 - 9945 (-)
Type: TC
Location: 9754 - 9945 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_12
Type: TF
Location: 10052 - 10840 (+)
Type: TF
Location: 10052 - 10840 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_13
Type: TC
Location: 10908 - 12377 (+)
Type: TC
Location: 10908 - 12377 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5593_13 | vegetarian > omnivore | 1.58097 | 0.04105 |