Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC37
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- CGC Family ID: CGCFAM_07594
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_3 | 2212 | 3945 | - | 2.A.36.6.11 |
| peptidase | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_4 | 4059 | 4970 | - | S66.UPW |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_5 | 5072 | 5686 | + | GH23 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_6 | 5687 | 6418 | - | PilZ | PilZN |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_7 | 6628 | 6879 | + | 1.E.43.1.1 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_8 | 6931 | 8634 | - | GH37 |
| NULL(UNKNOWN) | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_9 | 9604 | 10095 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_10 | 10119 | 10625 | + | T6SS-SciN |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_11 | 10649 | 11992 | + | 3.A.23.1.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_12 | 12010 | 13248 | + | 3.A.23.1.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_13 | 13252 | 16863 | + | 3.A.23.1.1 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_14 | 16882 | 17592 | + | TagF_N |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_15 | 17604 | 18620 | + | ImpA_N |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_16 | 18695 | 19219 | + | 3.A.23.2.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_17 | 19223 | 20725 | + | 3.A.23.2.1 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_3
Type: TC
Location: 2212 - 3945 (-)
Type: TC
Location: 2212 - 3945 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_4
Type: peptidase
Location: 4059 - 4970 (-)
Type: peptidase
Location: 4059 - 4970 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_5
Type: CAZyme
Location: 5072 - 5686 (+)
Type: CAZyme
Location: 5072 - 5686 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_6
Type: pfam
Location: 5687 - 6418 (-)
Type: pfam
Location: 5687 - 6418 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_7
Type: TC
Location: 6628 - 6879 (+)
Type: TC
Location: 6628 - 6879 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_8
Type: CAZyme
Location: 6931 - 8634 (-)
Type: CAZyme
Location: 6931 - 8634 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_9
Type:
Location: 9604 - 10095 (+)
Type:
Location: 9604 - 10095 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_10
Type: pfam
Location: 10119 - 10625 (+)
Type: pfam
Location: 10119 - 10625 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_11
Type: TC
Location: 10649 - 11992 (+)
Type: TC
Location: 10649 - 11992 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_12
Type: TC
Location: 12010 - 13248 (+)
Type: TC
Location: 12010 - 13248 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_13
Type: TC
Location: 13252 - 16863 (+)
Type: TC
Location: 13252 - 16863 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_14
Type: pfam
Location: 16882 - 17592 (+)
Type: pfam
Location: 16882 - 17592 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_15
Type: pfam
Location: 17604 - 18620 (+)
Type: pfam
Location: 17604 - 18620 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_16
Type: TC
Location: 18695 - 19219 (+)
Type: TC
Location: 18695 - 19219 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_17
Type: TC
Location: 19223 - 20725 (+)
Type: TC
Location: 19223 - 20725 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_16 | vegetarian > omnivore | 1.08377 | 0.04105 |
| Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_5232_16 | vegetarian > vegan | 1.75744 | 0.02706 |