Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC28
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 1
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- CGC Family ID: CGCFAM_00627
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_1 | 1 | 135 | + | 3.A.2.1.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_2 | 156 | 575 | + | 3.A.2.1.1 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_3 | 909 | 3014 | - | PL9 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_4 | 3358 | 4728 | + | Hexapep | Hexapep | NTP_transferase | NTP_transf_3 | Hexapep_2 | Hexapep_2 |
| STP | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_5 | 4973 | 6802 | + | SIS | SIS |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_6 | 6900 | 9161 | + | 3.A.23.2.1 |
| NULL(UNKNOWN) | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_7 | 9172 | 9519 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_8 | 9564 | 9953 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_9 | 10387 | 11427 | + | 3.A.1.7.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_10 | 11552 | 12160 | + | 3.A.1.7.1 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_1
Type: TC
Location: 1 - 135 (+)
Type: TC
Location: 1 - 135 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_2
Type: TC
Location: 156 - 575 (+)
Type: TC
Location: 156 - 575 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_3
Type: CAZyme
Location: 909 - 3014 (-)
Type: CAZyme
Location: 909 - 3014 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_4
Type: pfam
Location: 3358 - 4728 (+)
Type: pfam
Location: 3358 - 4728 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_5
Type: STP
Location: 4973 - 6802 (+)
Type: STP
Location: 4973 - 6802 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_6
Type: TC
Location: 6900 - 9161 (+)
Type: TC
Location: 6900 - 9161 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_7
Type:
Location: 9172 - 9519 (+)
Type:
Location: 9172 - 9519 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_8
Type:
Location: 9564 - 9953 (-)
Type:
Location: 9564 - 9953 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_9
Type: TC
Location: 10387 - 11427 (+)
Type: TC
Location: 10387 - 11427 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_3989_10
Type: TC
Location: 11552 - 12160 (+)
Type: TC
Location: 11552 - 12160 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.