Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC21
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- CGC Family ID: CGCFAM_07593
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_9 | 7645 | 9036 | - | GH1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_10 | 9052 | 10911 | - | 4.A.1.2.2 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_11 | 11028 | 11918 | - | PRD | PRD | CAT_RBD |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_12 | 11918 | 12790 | - | SurE |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_13 | 12805 | 14193 | - | 1.B.25.1.19 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_14 | 14461 | 15399 | - | Dus |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_15 | 15631 | 16029 | + | 1.E.14.1.4 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_16 | 16029 | 16721 | + | 2.A.122.1.1 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_17 | 16851 | 17732 | + | dCMP_cyt_deam_1 | dCMP_cyt_deam_2 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_18 | 17855 | 18568 | + | 9.B.114.1.1 |
| NULL(UNKNOWN) | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_19 | 18578 | 19000 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_20 | 19213 | 19449 | - | BssS |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_21 | 19590 | 20600 | - | 3.A.1.2.3 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_9
Type: CAZyme
Location: 7645 - 9036 (-)
Type: CAZyme
Location: 7645 - 9036 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_10
Type: TC
Location: 9052 - 10911 (-)
Type: TC
Location: 9052 - 10911 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_11
Type: pfam
Location: 11028 - 11918 (-)
Type: pfam
Location: 11028 - 11918 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_12
Type: pfam
Location: 11918 - 12790 (-)
Type: pfam
Location: 11918 - 12790 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_13
Type: TC
Location: 12805 - 14193 (-)
Type: TC
Location: 12805 - 14193 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_14
Type: pfam
Location: 14461 - 15399 (-)
Type: pfam
Location: 14461 - 15399 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_15
Type: TC
Location: 15631 - 16029 (+)
Type: TC
Location: 15631 - 16029 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_16
Type: TC
Location: 16029 - 16721 (+)
Type: TC
Location: 16029 - 16721 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_17
Type: pfam
Location: 16851 - 17732 (+)
Type: pfam
Location: 16851 - 17732 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_18
Type: TC
Location: 17855 - 18568 (+)
Type: TC
Location: 17855 - 18568 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_19
Type:
Location: 18578 - 19000 (-)
Type:
Location: 18578 - 19000 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_20
Type: pfam
Location: 19213 - 19449 (-)
Type: pfam
Location: 19213 - 19449 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2753_21
Type: TC
Location: 19590 - 20600 (-)
Type: TC
Location: 19590 - 20600 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.