Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC19
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_5 | 2883 | 4571 | - | 9.B.33.1.1 |
| TF | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_6 | 4791 | 5525 | + | MerR |
| NULL(UNKNOWN) | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_7 | 5586 | 5699 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_8 | 5674 | 6411 | - | 3.A.1.12.15 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_9 | 6395 | 7342 | - | 3.A.1.12.15 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_10 | 7335 | 8489 | - | 3.A.1.12.15 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_11 | 8496 | 9413 | - | 3.A.1.12.15 |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_12 | 9554 | 11851 | - | GH3 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_5
Type: TC
Location: 2883 - 4571 (-)
Type: TC
Location: 2883 - 4571 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_6
Type: TF
Location: 4791 - 5525 (+)
Type: TF
Location: 4791 - 5525 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_7
Type:
Location: 5586 - 5699 (+)
Type:
Location: 5586 - 5699 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_8
Type: TC
Location: 5674 - 6411 (-)
Type: TC
Location: 5674 - 6411 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_9
Type: TC
Location: 6395 - 7342 (-)
Type: TC
Location: 6395 - 7342 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_10
Type: TC
Location: 7335 - 8489 (-)
Type: TC
Location: 7335 - 8489 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_11
Type: TC
Location: 8496 - 9413 (-)
Type: TC
Location: 8496 - 9413 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_12
Type: CAZyme
Location: 9554 - 11851 (-)
Type: CAZyme
Location: 9554 - 11851 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2414_11 | vegetarian > vegan | 1.97659 | 0.01829 |