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Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_36 37930 40134 + 3.A.3.6.2
pfam Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_37 40131 40376 - TusA
TC Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_38 40565 41230 + 2.A.88.8.6
pfam Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_39 41303 41860 + DcrB
TC Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_40 41932 43137 - 2.A.1.46.7
TC Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_41 43284 44333 + 2.A.86.1.2
TC Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_42 44337 44720 - 2.A.7.22.1
TC Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_43 44717 45055 - 2.A.7.22.2
CAZyme Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_44 45052 46692 - GT83
pfam Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_45 46689 47591 - Polysacc_deac_1
pfam Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_46 47594 49573 - Formyl_trans_N | 3Beta_HSD | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
CAZyme Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413 Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_47 49573 50553 - GT2
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_36
Type: TC
Location: 37930 - 40134 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_37
Type: pfam
Location: 40131 - 40376 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_38
Type: TC
Location: 40565 - 41230 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_39
Type: pfam
Location: 41303 - 41860 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_40
Type: TC
Location: 41932 - 43137 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_41
Type: TC
Location: 43284 - 44333 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_42
Type: TC
Location: 44337 - 44720 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_43
Type: TC
Location: 44717 - 45055 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_44
Type: CAZyme
Location: 45052 - 46692 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_45
Type: pfam
Location: 46689 - 47591 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_46
Type: pfam
Location: 47594 - 49573 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_47
Type: CAZyme
Location: 49573 - 50553 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2413_47 vegetarian > omnivore 1.57080 0.04105

🧭 Explore Read Mapping of CGC

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