Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC15
🧬 Cluster Details
- Gene Count: 17
- CAZyme Count: 1
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- CGC Family ID: CGCFAM_00625
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_10 | 12562 | 13293 | + | GT51 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_11 | 13294 | 13566 | - | 8.A.8.1.5 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_12 | 13563 | 14417 | - | RapZ-like_N | PapZ_C |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_13 | 14463 | 14954 | - | 4.A.2.1.7 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_14 | 15035 | 15322 | - | Ribosomal_S30AE |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_15 | 15345 | 16778 | - | Sigma54_AID | Sigma54_DBD | Sigma54_CBD |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_16 | 16827 | 17552 | - | 1.B.42.1.2 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_17 | 17559 | 18119 | - | 1.B.42.1.2 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_18 | 18088 | 18663 | - | 1.B.42.1.2 |
| pfam | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_19 | 18660 | 19226 | - | Hydrolase_3 |
| STP | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_20 | 19241 | 20227 | - | CBS | CBS | SIS |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_21 | 20241 | 21215 | - | 2.A.19.5.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_22 | 21446 | 22258 | + | 3.A.1.27.3 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_23 | 22266 | 23048 | + | 3.A.1.27.3 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_24 | 23053 | 23604 | + | 3.A.1.27.3 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_25 | 23622 | 24260 | + | 3.A.1.27.3 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_26 | 24257 | 24550 | + | 3.A.1.27.3 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_10
Type: CAZyme
Location: 12562 - 13293 (+)
Type: CAZyme
Location: 12562 - 13293 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_11
Type: TC
Location: 13294 - 13566 (-)
Type: TC
Location: 13294 - 13566 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_12
Type: pfam
Location: 13563 - 14417 (-)
Type: pfam
Location: 13563 - 14417 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_13
Type: TC
Location: 14463 - 14954 (-)
Type: TC
Location: 14463 - 14954 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_14
Type: pfam
Location: 15035 - 15322 (-)
Type: pfam
Location: 15035 - 15322 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_15
Type: pfam
Location: 15345 - 16778 (-)
Type: pfam
Location: 15345 - 16778 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_16
Type: TC
Location: 16827 - 17552 (-)
Type: TC
Location: 16827 - 17552 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_17
Type: TC
Location: 17559 - 18119 (-)
Type: TC
Location: 17559 - 18119 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_18
Type: TC
Location: 18088 - 18663 (-)
Type: TC
Location: 18088 - 18663 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_19
Type: pfam
Location: 18660 - 19226 (-)
Type: pfam
Location: 18660 - 19226 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_20
Type: STP
Location: 19241 - 20227 (-)
Type: STP
Location: 19241 - 20227 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_21
Type: TC
Location: 20241 - 21215 (-)
Type: TC
Location: 20241 - 21215 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_22
Type: TC
Location: 21446 - 22258 (+)
Type: TC
Location: 21446 - 22258 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_23
Type: TC
Location: 22266 - 23048 (+)
Type: TC
Location: 22266 - 23048 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_24
Type: TC
Location: 23053 - 23604 (+)
Type: TC
Location: 23053 - 23604 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_25
Type: TC
Location: 23622 - 24260 (+)
Type: TC
Location: 23622 - 24260 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_2200_26
Type: TC
Location: 24257 - 24550 (+)
Type: TC
Location: 24257 - 24550 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.