Cluster: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_CGC12
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1
- Continent: North America
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_3 | 1248 | 2126 | - | 3.A.1.15.10 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_4 | 2138 | 3001 | - | 3.A.1.15.10 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_5 | 2998 | 3660 | - | 3.A.1.15.10 |
| NULL(UNKNOWN) | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_6 | 3657 | 3767 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_7 | 3887 | 4969 | - | GH103 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_8 | 5239 | 5799 | + | 4.A.4.1.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_9 | 5796 | 6755 | + | 4.A.4.1.1 |
| TC | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979 | Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_10 | 6768 | 7130 | + | 4.A.4.1.1 |
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_3
Type: TC
Location: 1248 - 2126 (-)
Type: TC
Location: 1248 - 2126 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_4
Type: TC
Location: 2138 - 3001 (-)
Type: TC
Location: 2138 - 3001 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_5
Type: TC
Location: 2998 - 3660 (-)
Type: TC
Location: 2998 - 3660 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_6
Type:
Location: 3657 - 3767 (-)
Type:
Location: 3657 - 3767 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_7
Type: CAZyme
Location: 3887 - 4969 (-)
Type: CAZyme
Location: 3887 - 4969 (-)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_8
Type: TC
Location: 5239 - 5799 (+)
Type: TC
Location: 5239 - 5799 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_9
Type: TC
Location: 5796 - 6755 (+)
Type: TC
Location: 5796 - 6755 (+)
Gene ID: Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_10
Type: TC
Location: 6768 - 7130 (+)
Type: TC
Location: 6768 - 7130 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Kosakonia
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| Baumann-DudenhoefferAM_2018_SRR7217540_bin.1_k141_1979_8 | vegetarian > vegan | 1.39699 | 0.02706 |