Cluster: BackhedF_2015_ERR526017_bin.6_CGC4
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR526017_bin.6
- CGC Family ID: CGCFAM_00416
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_11 | 8498 | 9889 | - | 2.A.66.2.23 |
| NULL(UNKNOWN) | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_12 | 9906 | 10493 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_13 | 10429 | 11331 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_14 | 11339 | 12289 | - | GT2 |
| NULL(UNKNOWN) | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_15 | 12291 | 12455 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| NULL(UNKNOWN) | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_16 | 12799 | 13941 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_17 | 13938 | 14834 | - | GT2 |
| CAZyme | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_18 | 14834 | 15601 | - | GT32 |
| pfam | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_19 | 15606 | 16091 | - | Glyco_tran_28_C |
| pfam | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_20 | 16103 | 16570 | - | Alg14 |
| TC | BackhedF_2015_ERR526017_bin.6_k119_5385 | BackhedF_2015_ERR526017_bin.6_k119_5385_21 | 16571 | 17284 | - | 9.B.18.1.2 |
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_11
Type: TC
Location: 8498 - 9889 (-)
Type: TC
Location: 8498 - 9889 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_12
Type:
Location: 9906 - 10493 (+)
Type:
Location: 9906 - 10493 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_13
Type:
Location: 10429 - 11331 (-)
Type:
Location: 10429 - 11331 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_14
Type: CAZyme
Location: 11339 - 12289 (-)
Type: CAZyme
Location: 11339 - 12289 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_15
Type:
Location: 12291 - 12455 (-)
Type:
Location: 12291 - 12455 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_16
Type:
Location: 12799 - 13941 (-)
Type:
Location: 12799 - 13941 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_17
Type: CAZyme
Location: 13938 - 14834 (-)
Type: CAZyme
Location: 13938 - 14834 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_18
Type: CAZyme
Location: 14834 - 15601 (-)
Type: CAZyme
Location: 14834 - 15601 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_19
Type: pfam
Location: 15606 - 16091 (-)
Type: pfam
Location: 15606 - 16091 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_20
Type: pfam
Location: 16103 - 16570 (-)
Type: pfam
Location: 16103 - 16570 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_5385_21
Type: TC
Location: 16571 - 17284 (-)
Type: TC
Location: 16571 - 17284 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900544995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.