Cluster: BackhedF_2015_ERR526017_bin.6_CGC18
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR526017_bin.6
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR526017_bin.6_k119_14155 | BackhedF_2015_ERR526017_bin.6_k119_14155_28 | 34132 | 35301 | - | CE9 |
| STP | BackhedF_2015_ERR526017_bin.6_k119_14155 | BackhedF_2015_ERR526017_bin.6_k119_14155_29 | 35419 | 36585 | - | SIS | SIS |
| TF | BackhedF_2015_ERR526017_bin.6_k119_14155 | BackhedF_2015_ERR526017_bin.6_k119_14155_30 | 36700 | 37431 | - | GntR |
| TC | BackhedF_2015_ERR526017_bin.6_k119_14155 | BackhedF_2015_ERR526017_bin.6_k119_14155_31 | 37616 | 38698 | - | 4.A.6.1.4 |
| TC | BackhedF_2015_ERR526017_bin.6_k119_14155 | BackhedF_2015_ERR526017_bin.6_k119_14155_32 | 38688 | 39488 | - | 4.A.6.1.4 |
| TC | BackhedF_2015_ERR526017_bin.6_k119_14155 | BackhedF_2015_ERR526017_bin.6_k119_14155_33 | 39579 | 40061 | - | 4.A.6.1.4 |
| pfam | BackhedF_2015_ERR526017_bin.6_k119_14155 | BackhedF_2015_ERR526017_bin.6_k119_14155_34 | 40098 | 40379 | - | YajC |
| TC | BackhedF_2015_ERR526017_bin.6_k119_14155 | BackhedF_2015_ERR526017_bin.6_k119_14155_35 | 40379 | 40822 | - | 4.A.6.1.16 |
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_14155_28
Type: CAZyme
Location: 34132 - 35301 (-)
Type: CAZyme
Location: 34132 - 35301 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_14155_29
Type: STP
Location: 35419 - 36585 (-)
Type: STP
Location: 35419 - 36585 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_14155_30
Type: TF
Location: 36700 - 37431 (-)
Type: TF
Location: 36700 - 37431 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_14155_31
Type: TC
Location: 37616 - 38698 (-)
Type: TC
Location: 37616 - 38698 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_14155_32
Type: TC
Location: 38688 - 39488 (-)
Type: TC
Location: 38688 - 39488 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_14155_33
Type: TC
Location: 39579 - 40061 (-)
Type: TC
Location: 39579 - 40061 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_14155_34
Type: pfam
Location: 40098 - 40379 (-)
Type: pfam
Location: 40098 - 40379 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_14155_35
Type: TC
Location: 40379 - 40822 (-)
Type: TC
Location: 40379 - 40822 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900544995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.