Cluster: BackhedF_2015_ERR526017_bin.6_CGC16
🧬 Cluster Details
- Gene Count: 11
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR526017_bin.6
- CGC Family ID: CGCFAM_00024
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_7 | 5384 | 6760 | - | GH13_20 |
| TC | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_8 | 6913 | 8109 | - | 2.A.1.2.18 |
| pfam | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_9 | 8212 | 8691 | - | tRNA_edit |
| TC | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_10 | 8787 | 11144 | - | 9.A.8.1.6 |
| peptidase | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_11 | 11618 | 12517 | - | S09.UPW |
| TC | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_12 | 12761 | 13324 | + | 4.A.1.2.6 |
| pfam | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_13 | 13504 | 14907 | + | tRNA-synt_2 | tRNA_anti-codon |
| NULL(UNKNOWN) | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_14 | 15167 | 15952 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_15 | 16113 | 17093 | + | 3.A.1.34.1 |
| TC | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_16 | 17298 | 18221 | + | 3.A.1.34.1 |
| TC | BackhedF_2015_ERR526017_bin.6_k119_11990 | BackhedF_2015_ERR526017_bin.6_k119_11990_17 | 18214 | 19008 | + | 3.A.1.34.1 |
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_7
Type: CAZyme
Location: 5384 - 6760 (-)
Type: CAZyme
Location: 5384 - 6760 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_8
Type: TC
Location: 6913 - 8109 (-)
Type: TC
Location: 6913 - 8109 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_9
Type: pfam
Location: 8212 - 8691 (-)
Type: pfam
Location: 8212 - 8691 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_10
Type: TC
Location: 8787 - 11144 (-)
Type: TC
Location: 8787 - 11144 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_11
Type: peptidase
Location: 11618 - 12517 (-)
Type: peptidase
Location: 11618 - 12517 (-)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_12
Type: TC
Location: 12761 - 13324 (+)
Type: TC
Location: 12761 - 13324 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_13
Type: pfam
Location: 13504 - 14907 (+)
Type: pfam
Location: 13504 - 14907 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_14
Type:
Location: 15167 - 15952 (+)
Type:
Location: 15167 - 15952 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_15
Type: TC
Location: 16113 - 17093 (+)
Type: TC
Location: 16113 - 17093 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_16
Type: TC
Location: 17298 - 18221 (+)
Type: TC
Location: 17298 - 18221 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11990_17
Type: TC
Location: 18214 - 19008 (+)
Type: TC
Location: 18214 - 19008 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900544995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.