dbCAN HGM

Cluster: BackhedF_2015_ERR526017_bin.6_CGC15

Gene Type	Contig ID	Protein ID	Start	Stop	Direction	Protein Family
TC	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_57	60438	61880	+	3.A.1.8.1
TC	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_58	61884	62954	+	3.A.1.1.3
pfam	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_59	63382	64665	+	HGD-D
TC	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_60	64850	66460	+	3.A.1.5.11
TC	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_61	66549	67502	+	3.A.1.5.39
TC	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_62	67499	68329	+	3.A.1.5.39
TC	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_63	68333	69328	+	3.A.1.5.37
TC	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_64	69318	70103	+	3.A.1.5.36
pfam	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_65	70180	71343	+	HGD-D
pfam	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_66	71448	72212	+	BcrAD_BadFG
CAZyme	BackhedF_2015_ERR526017_bin.6_k119_11693	BackhedF_2015_ERR526017_bin.6_k119_11693_67	72227	73444	+	GT4

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_57
Type: TC
Location: 60438 - 61880 (+)

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_58
Type: TC
Location: 61884 - 62954 (+)

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_59
Type: pfam
Location: 63382 - 64665 (+)

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_60
Type: TC
Location: 64850 - 66460 (+)

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_61
Type: TC
Location: 66549 - 67502 (+)

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_62
Type: TC
Location: 67499 - 68329 (+)

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_63
Type: TC
Location: 68333 - 69328 (+)

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_64
Type: TC
Location: 69318 - 70103 (+)

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_65
Type: pfam
Location: 70180 - 71343 (+)

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_66
Type: pfam
Location: 71448 - 72212 (+)

Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11693_67
Type: CAZyme
Location: 72227 - 73444 (+)

Taxonomic Lineage

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Gene Level Read Mapping

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Gene ID	Condition Pair	log2FC	FDR P-value
BackhedF_2015_ERR526017_bin.6_k119_11693_60	vegan > omnivore	3.20809	0.01057
BackhedF_2015_ERR526017_bin.6_k119_11693_61	vegan > omnivore	2.65355	0.01057
BackhedF_2015_ERR526017_bin.6_k119_11693_61	vegetarian > omnivore	1.10646	0.02258
BackhedF_2015_ERR526017_bin.6_k119_11693_62	vegan > omnivore	2.81566	0.01057
BackhedF_2015_ERR526017_bin.6_k119_11693_62	vegetarian > omnivore	1.12607	0.02258
BackhedF_2015_ERR526017_bin.6_k119_11693_64	vegan > omnivore	2.75766	0.01057
BackhedF_2015_ERR526017_bin.6_k119_11693_67	vegan > omnivore	1.52875	0.01057