Cluster: BackhedF_2015_ERR526017_bin.6_CGC12
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR526017_bin.6
- CGC Family ID: CGCFAM_00464
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR526017_bin.6_k119_11555 | BackhedF_2015_ERR526017_bin.6_k119_11555_29 | 39388 | 40947 | + | 2.A.2.5.1 |
| CAZyme | BackhedF_2015_ERR526017_bin.6_k119_11555 | BackhedF_2015_ERR526017_bin.6_k119_11555_30 | 41063 | 42658 | + | GH28 |
| peptidase | BackhedF_2015_ERR526017_bin.6_k119_11555 | BackhedF_2015_ERR526017_bin.6_k119_11555_31 | 42763 | 43572 | + | S09.UPW |
| CAZyme | BackhedF_2015_ERR526017_bin.6_k119_11555 | BackhedF_2015_ERR526017_bin.6_k119_11555_32 | 43569 | 45731 | + | CE19 | CE8 |
| pfam | BackhedF_2015_ERR526017_bin.6_k119_11555 | BackhedF_2015_ERR526017_bin.6_k119_11555_33 | 45810 | 46481 | + | Lipase_GDSL | Lipase_GDSL_2 |
| CAZyme | BackhedF_2015_ERR526017_bin.6_k119_11555 | BackhedF_2015_ERR526017_bin.6_k119_11555_34 | 46588 | 47826 | + | GH105 |
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11555_29
Type: TC
Location: 39388 - 40947 (+)
Type: TC
Location: 39388 - 40947 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11555_30
Type: CAZyme
Location: 41063 - 42658 (+)
Type: CAZyme
Location: 41063 - 42658 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11555_31
Type: peptidase
Location: 42763 - 43572 (+)
Type: peptidase
Location: 42763 - 43572 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11555_32
Type: CAZyme
Location: 43569 - 45731 (+)
Type: CAZyme
Location: 43569 - 45731 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11555_33
Type: pfam
Location: 45810 - 46481 (+)
Type: pfam
Location: 45810 - 46481 (+)
Gene ID: BackhedF_2015_ERR526017_bin.6_k119_11555_34
Type: CAZyme
Location: 46588 - 47826 (+)
Type: CAZyme
Location: 46588 - 47826 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900544995
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.