Cluster: BackhedF_2015_ERR525972_bin.4_CGC7
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525972_bin.4
- CGC Family ID: CGCFAM_00784
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525972_bin.4_k119_9179 | BackhedF_2015_ERR525972_bin.4_k119_9179_1 | 2 | 868 | + | 1.B.40.1.5 |
| pfam | BackhedF_2015_ERR525972_bin.4_k119_9179 | BackhedF_2015_ERR525972_bin.4_k119_9179_2 | 1000 | 2139 | + | DUF2827 |
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_9179 | BackhedF_2015_ERR525972_bin.4_k119_9179_3 | 2231 | 3763 | - | GT2 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_9179 | BackhedF_2015_ERR525972_bin.4_k119_9179_4 | 3772 | 4959 | - | 2.A.33.1.2 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_9179 | BackhedF_2015_ERR525972_bin.4_k119_9179_5 | 5159 | 6460 | + | 2.A.26.1.2 |
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_9179_1
Type: TC
Location: 2 - 868 (+)
Type: TC
Location: 2 - 868 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_9179_2
Type: pfam
Location: 1000 - 2139 (+)
Type: pfam
Location: 1000 - 2139 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_9179_3
Type: CAZyme
Location: 2231 - 3763 (-)
Type: CAZyme
Location: 2231 - 3763 (-)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_9179_4
Type: TC
Location: 3772 - 4959 (-)
Type: TC
Location: 3772 - 4959 (-)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_9179_5
Type: TC
Location: 5159 - 6460 (+)
Type: TC
Location: 5159 - 6460 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525972_bin.4_k119_9179_2 | vegetarian > vegan | 1.09114 | 0.01135 |