Cluster: BackhedF_2015_ERR525972_bin.4_CGC4
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525972_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_5579 | BackhedF_2015_ERR525972_bin.4_k119_5579_2 | 269 | 1324 | + | GT9 |
| pfam | BackhedF_2015_ERR525972_bin.4_k119_5579 | BackhedF_2015_ERR525972_bin.4_k119_5579_3 | 1396 | 1740 | - | CMD |
| TF | BackhedF_2015_ERR525972_bin.4_k119_5579 | BackhedF_2015_ERR525972_bin.4_k119_5579_4 | 1844 | 2734 | + | HTH_AraC | HTH_AraC |
| TC | BackhedF_2015_ERR525972_bin.4_k119_5579 | BackhedF_2015_ERR525972_bin.4_k119_5579_5 | 2811 | 4655 | + | 3.A.1.106.2 |
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_5579_2
Type: CAZyme
Location: 269 - 1324 (+)
Type: CAZyme
Location: 269 - 1324 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_5579_3
Type: pfam
Location: 1396 - 1740 (-)
Type: pfam
Location: 1396 - 1740 (-)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_5579_4
Type: TF
Location: 1844 - 2734 (+)
Type: TF
Location: 1844 - 2734 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_5579_5
Type: TC
Location: 2811 - 4655 (+)
Type: TC
Location: 2811 - 4655 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525972_bin.4_k119_5579_2 | vegetarian > omnivore | 1.50707 | 0.00483 |
| BackhedF_2015_ERR525972_bin.4_k119_5579_2 | vegetarian > vegan | 1.05298 | 0.01135 |
| BackhedF_2015_ERR525972_bin.4_k119_5579_3 | vegan > omnivore | 1.24542 | 0.02173 |
| BackhedF_2015_ERR525972_bin.4_k119_5579_3 | vegetarian > omnivore | 1.18870 | 0.00483 |
| BackhedF_2015_ERR525972_bin.4_k119_5579_4 | vegetarian > vegan | 1.18731 | 0.01135 |
| BackhedF_2015_ERR525972_bin.4_k119_5579_5 | vegetarian > omnivore | 1.25266 | 0.00483 |
| BackhedF_2015_ERR525972_bin.4_k119_5579_5 | vegetarian > vegan | 1.63395 | 0.01135 |