Cluster: BackhedF_2015_ERR525972_bin.4_CGC2
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR525972_bin.4
- CGC Family ID: CGCFAM_00702
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525972_bin.4_k119_3161 | BackhedF_2015_ERR525972_bin.4_k119_3161_1 | 3 | 722 | + | 2.A.88.8.6 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_3161 | BackhedF_2015_ERR525972_bin.4_k119_3161_2 | 737 | 2053 | + | 2.A.1.15.11 |
| peptidase | BackhedF_2015_ERR525972_bin.4_k119_3161 | BackhedF_2015_ERR525972_bin.4_k119_3161_3 | 2274 | 3101 | + | C44.UPW |
| STP | BackhedF_2015_ERR525972_bin.4_k119_3161 | BackhedF_2015_ERR525972_bin.4_k119_3161_4 | 3170 | 4540 | - | Pyr_redox_2 |
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_3161 | BackhedF_2015_ERR525972_bin.4_k119_3161_5 | 4759 | 5886 | + | GT2 |
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_3161 | BackhedF_2015_ERR525972_bin.4_k119_3161_6 | 5920 | 6894 | + | GT2 |
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_3161 | BackhedF_2015_ERR525972_bin.4_k119_3161_7 | 6916 | 7752 | - | GT8 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_3161 | BackhedF_2015_ERR525972_bin.4_k119_3161_8 | 7908 | 9764 | - | 1.B.40.2.2 |
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_3161_1
Type: TC
Location: 3 - 722 (+)
Type: TC
Location: 3 - 722 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_3161_2
Type: TC
Location: 737 - 2053 (+)
Type: TC
Location: 737 - 2053 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_3161_3
Type: peptidase
Location: 2274 - 3101 (+)
Type: peptidase
Location: 2274 - 3101 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_3161_4
Type: STP
Location: 3170 - 4540 (-)
Type: STP
Location: 3170 - 4540 (-)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_3161_5
Type: CAZyme
Location: 4759 - 5886 (+)
Type: CAZyme
Location: 4759 - 5886 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_3161_6
Type: CAZyme
Location: 5920 - 6894 (+)
Type: CAZyme
Location: 5920 - 6894 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_3161_7
Type: CAZyme
Location: 6916 - 7752 (-)
Type: CAZyme
Location: 6916 - 7752 (-)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_3161_8
Type: TC
Location: 7908 - 9764 (-)
Type: TC
Location: 7908 - 9764 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525972_bin.4_k119_3161_1 | vegan > omnivore | 1.06021 | 0.02173 |
| BackhedF_2015_ERR525972_bin.4_k119_3161_3 | vegan > omnivore | 1.93863 | 0.02173 |
| BackhedF_2015_ERR525972_bin.4_k119_3161_3 | vegetarian > omnivore | 1.43672 | 0.00483 |
| BackhedF_2015_ERR525972_bin.4_k119_3161_4 | vegan > omnivore | 1.47847 | 0.02173 |