Cluster: BackhedF_2015_ERR525972_bin.4_CGC18
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525972_bin.4
- CGC Family ID: CGCFAM_00908
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_31066 | BackhedF_2015_ERR525972_bin.4_k119_31066_5 | 3031 | 4074 | + | GH3 |
| pfam | BackhedF_2015_ERR525972_bin.4_k119_31066 | BackhedF_2015_ERR525972_bin.4_k119_31066_6 | 4071 | 5243 | + | MTS | tRNA_U5-meth_tr | Methyltransf_25 | Methyltransf_31 |
| pfam | BackhedF_2015_ERR525972_bin.4_k119_31066 | BackhedF_2015_ERR525972_bin.4_k119_31066_7 | 5269 | 5892 | + | DNA_alkylation |
| TC | BackhedF_2015_ERR525972_bin.4_k119_31066 | BackhedF_2015_ERR525972_bin.4_k119_31066_8 | 5914 | 6612 | - | 3.A.1.15.4 |
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_31066_5
Type: CAZyme
Location: 3031 - 4074 (+)
Type: CAZyme
Location: 3031 - 4074 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_31066_6
Type: pfam
Location: 4071 - 5243 (+)
Type: pfam
Location: 4071 - 5243 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_31066_7
Type: pfam
Location: 5269 - 5892 (+)
Type: pfam
Location: 5269 - 5892 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_31066_8
Type: TC
Location: 5914 - 6612 (-)
Type: TC
Location: 5914 - 6612 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525972_bin.4_k119_31066_6 | vegan > omnivore | 1.48613 | 0.02173 |
| BackhedF_2015_ERR525972_bin.4_k119_31066_6 | vegetarian > omnivore | 1.07571 | 0.00483 |
| BackhedF_2015_ERR525972_bin.4_k119_31066_7 | vegetarian > omnivore | 2.37986 | 0.00483 |
| BackhedF_2015_ERR525972_bin.4_k119_31066_7 | vegetarian > vegan | 1.46193 | 0.01135 |
| BackhedF_2015_ERR525972_bin.4_k119_31066_8 | vegan > omnivore | 2.14023 | 0.02173 |
| BackhedF_2015_ERR525972_bin.4_k119_31066_8 | vegetarian > omnivore | 1.49389 | 0.00483 |