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Cluster: BackhedF_2015_ERR525972_bin.4_CGC17

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC BackhedF_2015_ERR525972_bin.4_k119_27318 BackhedF_2015_ERR525972_bin.4_k119_27318_3 2397 3767 + 2.A.25.1.4
pfam BackhedF_2015_ERR525972_bin.4_k119_27318 BackhedF_2015_ERR525972_bin.4_k119_27318_4 4009 4332 + Ribosomal_S30AE
NULL(UNKNOWN) BackhedF_2015_ERR525972_bin.4_k119_27318 BackhedF_2015_ERR525972_bin.4_k119_27318_5 4379 4522 - NULL(UNKNOWN)
[View Structural Homologs]
CAZyme BackhedF_2015_ERR525972_bin.4_k119_27318 BackhedF_2015_ERR525972_bin.4_k119_27318_6 4578 5972 - GH23
TC BackhedF_2015_ERR525972_bin.4_k119_27318 BackhedF_2015_ERR525972_bin.4_k119_27318_7 6071 7909 - 3.A.18.1.1
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_27318_3
Type: TC
Location: 2397 - 3767 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_27318_4
Type: pfam
Location: 4009 - 4332 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_27318_5
Type:
Location: 4379 - 4522 (-)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_27318_6
Type: CAZyme
Location: 4578 - 5972 (-)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_27318_7
Type: TC
Location: 6071 - 7909 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
BackhedF_2015_ERR525972_bin.4_k119_27318_5 vegan > omnivore 1.08444 0.02173
BackhedF_2015_ERR525972_bin.4_k119_27318_5 vegetarian > omnivore 1.77586 0.00483
BackhedF_2015_ERR525972_bin.4_k119_27318_6 vegetarian > omnivore 1.34263 0.00483

🧭 Explore Read Mapping of CGC

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