Cluster: BackhedF_2015_ERR525972_bin.4_CGC14
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: BackhedF_2015_ERR525972_bin.4
- CGC Family ID: CGCFAM_01408
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_19645 | BackhedF_2015_ERR525972_bin.4_k119_19645_1 | 37 | 1080 | + | GT9 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_19645 | BackhedF_2015_ERR525972_bin.4_k119_19645_2 | 1077 | 1982 | + | 2.A.7.3.58 |
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_19645 | BackhedF_2015_ERR525972_bin.4_k119_19645_3 | 1979 | 2932 | + | GT9 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_19645 | BackhedF_2015_ERR525972_bin.4_k119_19645_4 | 3098 | 4177 | + | 1.B.1.3.3 |
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_19645_1
Type: CAZyme
Location: 37 - 1080 (+)
Type: CAZyme
Location: 37 - 1080 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_19645_2
Type: TC
Location: 1077 - 1982 (+)
Type: TC
Location: 1077 - 1982 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_19645_3
Type: CAZyme
Location: 1979 - 2932 (+)
Type: CAZyme
Location: 1979 - 2932 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_19645_4
Type: TC
Location: 3098 - 4177 (+)
Type: TC
Location: 3098 - 4177 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525972_bin.4_k119_19645_4 | vegetarian > omnivore | 1.58033 | 0.00483 |
| BackhedF_2015_ERR525972_bin.4_k119_19645_4 | vegetarian > vegan | 1.00389 | 0.01135 |