Cluster: BackhedF_2015_ERR525972_bin.4_CGC13
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525972_bin.4
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_18324 | BackhedF_2015_ERR525972_bin.4_k119_18324_1 | 1 | 813 | + | GT2 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_18324 | BackhedF_2015_ERR525972_bin.4_k119_18324_2 | 810 | 2186 | + | 2.A.38.1.1 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_18324 | BackhedF_2015_ERR525972_bin.4_k119_18324_3 | 2265 | 2651 | + | 1.A.22.1.1 |
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_18324_1
Type: CAZyme
Location: 1 - 813 (+)
Type: CAZyme
Location: 1 - 813 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_18324_2
Type: TC
Location: 810 - 2186 (+)
Type: TC
Location: 810 - 2186 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_18324_3
Type: TC
Location: 2265 - 2651 (+)
Type: TC
Location: 2265 - 2651 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525972_bin.4_k119_18324_1 | vegan > omnivore | 2.09138 | 0.02173 |
| BackhedF_2015_ERR525972_bin.4_k119_18324_1 | vegetarian > omnivore | 1.23942 | 0.00483 |
| BackhedF_2015_ERR525972_bin.4_k119_18324_2 | vegetarian > omnivore | 1.16765 | 0.00483 |