Cluster: BackhedF_2015_ERR525972_bin.4_CGC11
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525972_bin.4
- CGC Family ID: CGCFAM_05006
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_17759 | BackhedF_2015_ERR525972_bin.4_k119_17759_4 | 2695 | 4713 | - | GT41 |
| pfam | BackhedF_2015_ERR525972_bin.4_k119_17759 | BackhedF_2015_ERR525972_bin.4_k119_17759_5 | 4753 | 6090 | - | UPF0004 | Radical_SAM | TRAM_2 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_17759 | BackhedF_2015_ERR525972_bin.4_k119_17759_6 | 6256 | 6972 | + | 9.B.20.2.2 |
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_17759_4
Type: CAZyme
Location: 2695 - 4713 (-)
Type: CAZyme
Location: 2695 - 4713 (-)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_17759_5
Type: pfam
Location: 4753 - 6090 (-)
Type: pfam
Location: 4753 - 6090 (-)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_17759_6
Type: TC
Location: 6256 - 6972 (+)
Type: TC
Location: 6256 - 6972 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.