Cluster: BackhedF_2015_ERR525972_bin.4_CGC1
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 4
- Substrate:
- Genome ID: BackhedF_2015_ERR525972_bin.4
- CGC Family ID: CGCFAM_01708
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_895 | BackhedF_2015_ERR525972_bin.4_k119_895_11 | 9980 | 10750 | + | GT25 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525972_bin.4_k119_895 | BackhedF_2015_ERR525972_bin.4_k119_895_12 | 10759 | 11958 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_895 | BackhedF_2015_ERR525972_bin.4_k119_895_13 | 11951 | 12832 | + | GT2 |
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_895 | BackhedF_2015_ERR525972_bin.4_k119_895_14 | 12856 | 13659 | + | GT2 |
| CAZyme | BackhedF_2015_ERR525972_bin.4_k119_895 | BackhedF_2015_ERR525972_bin.4_k119_895_15 | 13693 | 14808 | + | GH103 |
| pfam | BackhedF_2015_ERR525972_bin.4_k119_895 | BackhedF_2015_ERR525972_bin.4_k119_895_16 | 14888 | 16027 | + | Cytochrom_C | CCP_MauG |
| STP | BackhedF_2015_ERR525972_bin.4_k119_895 | BackhedF_2015_ERR525972_bin.4_k119_895_17 | 16127 | 17242 | + | Peripla_BP_2 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_895 | BackhedF_2015_ERR525972_bin.4_k119_895_18 | 17258 | 18307 | + | 3.A.1.14.5 |
| TC | BackhedF_2015_ERR525972_bin.4_k119_895 | BackhedF_2015_ERR525972_bin.4_k119_895_19 | 18307 | 19080 | + | 3.A.1.14.19 |
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_895_11
Type: CAZyme
Location: 9980 - 10750 (+)
Type: CAZyme
Location: 9980 - 10750 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_895_12
Type:
Location: 10759 - 11958 (+)
Type:
Location: 10759 - 11958 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_895_13
Type: CAZyme
Location: 11951 - 12832 (+)
Type: CAZyme
Location: 11951 - 12832 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_895_14
Type: CAZyme
Location: 12856 - 13659 (+)
Type: CAZyme
Location: 12856 - 13659 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_895_15
Type: CAZyme
Location: 13693 - 14808 (+)
Type: CAZyme
Location: 13693 - 14808 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_895_16
Type: pfam
Location: 14888 - 16027 (+)
Type: pfam
Location: 14888 - 16027 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_895_17
Type: STP
Location: 16127 - 17242 (+)
Type: STP
Location: 16127 - 17242 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_895_18
Type: TC
Location: 17258 - 18307 (+)
Type: TC
Location: 17258 - 18307 (+)
Gene ID: BackhedF_2015_ERR525972_bin.4_k119_895_19
Type: TC
Location: 18307 - 19080 (+)
Type: TC
Location: 18307 - 19080 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525972_bin.4_k119_895_13 | vegetarian > omnivore | 2.60042 | 0.00483 |
| BackhedF_2015_ERR525972_bin.4_k119_895_13 | vegetarian > vegan | 2.01328 | 0.01135 |
| BackhedF_2015_ERR525972_bin.4_k119_895_17 | vegan > omnivore | 1.86653 | 0.02173 |
| BackhedF_2015_ERR525972_bin.4_k119_895_17 | vegetarian > omnivore | 1.20620 | 0.00483 |