Cluster: BackhedF_2015_ERR525949_bin.8_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: BackhedF_2015_ERR525949_bin.8
- CGC Family ID: CGCFAM_00008
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_39 | 47226 | 49190 | + | GT111 |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_40 | 49217 | 51058 | + | GT2 |
| pfam | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_41 | 51096 | 51785 | - | DUF6020 |
| pfam | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_42 | 51924 | 52769 | - | DUF6020 |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_43 | 52735 | 53679 | - | GT81 |
| TC | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_44 | 53836 | 54681 | + | 3.A.1.103.6 |
| TC | BackhedF_2015_ERR525949_bin.8_k119_12542 | BackhedF_2015_ERR525949_bin.8_k119_12542_45 | 54691 | 55470 | + | 3.A.1.103.1 |
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_39
Type: CAZyme
Location: 47226 - 49190 (+)
Type: CAZyme
Location: 47226 - 49190 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_40
Type: CAZyme
Location: 49217 - 51058 (+)
Type: CAZyme
Location: 49217 - 51058 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_41
Type: pfam
Location: 51096 - 51785 (-)
Type: pfam
Location: 51096 - 51785 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_42
Type: pfam
Location: 51924 - 52769 (-)
Type: pfam
Location: 51924 - 52769 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_43
Type: CAZyme
Location: 52735 - 53679 (-)
Type: CAZyme
Location: 52735 - 53679 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_44
Type: TC
Location: 53836 - 54681 (+)
Type: TC
Location: 53836 - 54681 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_12542_45
Type: TC
Location: 54691 - 55470 (+)
Type: TC
Location: 54691 - 55470 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900540945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.