Cluster: BackhedF_2015_ERR525949_bin.8_CGC5
🧬 Cluster Details
- Gene Count: 9
- CAZyme Count: 2
- Substrate: host glycan
- Genome ID: BackhedF_2015_ERR525949_bin.8
- CGC Family ID: CGCFAM_00243
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_6670 | BackhedF_2015_ERR525949_bin.8_k119_6670_60 | 61413 | 63209 | + | GH35 |
| TC | BackhedF_2015_ERR525949_bin.8_k119_6670 | BackhedF_2015_ERR525949_bin.8_k119_6670_61 | 63212 | 63676 | + | 4.A.6.1.18 |
| TC | BackhedF_2015_ERR525949_bin.8_k119_6670 | BackhedF_2015_ERR525949_bin.8_k119_6670_62 | 63770 | 64657 | + | 4.A.6.1.18 |
| TC | BackhedF_2015_ERR525949_bin.8_k119_6670 | BackhedF_2015_ERR525949_bin.8_k119_6670_63 | 64647 | 65486 | + | 4.A.6.1.18 |
| NULL(UNKNOWN) | BackhedF_2015_ERR525949_bin.8_k119_6670 | BackhedF_2015_ERR525949_bin.8_k119_6670_64 | 65675 | 66298 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | BackhedF_2015_ERR525949_bin.8_k119_6670 | BackhedF_2015_ERR525949_bin.8_k119_6670_65 | 66380 | 66808 | + | 4.A.6.1.8 |
| TF | BackhedF_2015_ERR525949_bin.8_k119_6670 | BackhedF_2015_ERR525949_bin.8_k119_6670_66 | 66896 | 67630 | + | GntR |
| STP | BackhedF_2015_ERR525949_bin.8_k119_6670 | BackhedF_2015_ERR525949_bin.8_k119_6670_67 | 67742 | 68908 | + | SIS | SIS |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_6670 | BackhedF_2015_ERR525949_bin.8_k119_6670_68 | 69026 | 70195 | + | CE9 |
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_6670_60
Type: CAZyme
Location: 61413 - 63209 (+)
Type: CAZyme
Location: 61413 - 63209 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_6670_61
Type: TC
Location: 63212 - 63676 (+)
Type: TC
Location: 63212 - 63676 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_6670_62
Type: TC
Location: 63770 - 64657 (+)
Type: TC
Location: 63770 - 64657 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_6670_63
Type: TC
Location: 64647 - 65486 (+)
Type: TC
Location: 64647 - 65486 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_6670_64
Type:
Location: 65675 - 66298 (+)
Type:
Location: 65675 - 66298 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_6670_65
Type: TC
Location: 66380 - 66808 (+)
Type: TC
Location: 66380 - 66808 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_6670_66
Type: TF
Location: 66896 - 67630 (+)
Type: TF
Location: 66896 - 67630 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_6670_67
Type: STP
Location: 67742 - 68908 (+)
Type: STP
Location: 67742 - 68908 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_6670_68
Type: CAZyme
Location: 69026 - 70195 (+)
Type: CAZyme
Location: 69026 - 70195 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900540945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525949_bin.8_k119_6670_60 | vegetarian > vegan | 2.82106 | 0.02517 |
| BackhedF_2015_ERR525949_bin.8_k119_6670_61 | vegetarian > vegan | 3.43983 | 0.02517 |
| BackhedF_2015_ERR525949_bin.8_k119_6670_63 | vegetarian > vegan | 2.55675 | 0.02517 |