Cluster: BackhedF_2015_ERR525949_bin.8_CGC14
🧬 Cluster Details
- Gene Count: 10
- CAZyme Count: 2
- Substrate:
- Genome ID: BackhedF_2015_ERR525949_bin.8
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525949_bin.8_k119_18886 | BackhedF_2015_ERR525949_bin.8_k119_18886_5 | 4141 | 4479 | - | 4.A.3.1.2 |
| TF | BackhedF_2015_ERR525949_bin.8_k119_18886 | BackhedF_2015_ERR525949_bin.8_k119_18886_6 | 4694 | 5698 | - | LacI |
| TC | BackhedF_2015_ERR525949_bin.8_k119_18886 | BackhedF_2015_ERR525949_bin.8_k119_18886_7 | 6056 | 7831 | + | 4.A.3.1.1 |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_18886 | BackhedF_2015_ERR525949_bin.8_k119_18886_8 | 7898 | 9337 | + | GH1 |
| TF | BackhedF_2015_ERR525949_bin.8_k119_18886 | BackhedF_2015_ERR525949_bin.8_k119_18886_9 | 9604 | 10614 | - | LacI |
| TC | BackhedF_2015_ERR525949_bin.8_k119_18886 | BackhedF_2015_ERR525949_bin.8_k119_18886_10 | 10890 | 12668 | + | 4.A.3.1.1 |
| CAZyme | BackhedF_2015_ERR525949_bin.8_k119_18886 | BackhedF_2015_ERR525949_bin.8_k119_18886_11 | 12745 | 14166 | + | GH1 |
| TF | BackhedF_2015_ERR525949_bin.8_k119_18886 | BackhedF_2015_ERR525949_bin.8_k119_18886_12 | 14673 | 15437 | - | HTH_DeoR |
| sulfatase | BackhedF_2015_ERR525949_bin.8_k119_18886 | BackhedF_2015_ERR525949_bin.8_k119_18886_13 | 15644 | 16696 | + | S1_4 |
| TC | BackhedF_2015_ERR525949_bin.8_k119_18886 | BackhedF_2015_ERR525949_bin.8_k119_18886_14 | 17023 | 17505 | - | 4.A.6.1.3 |
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_18886_5
Type: TC
Location: 4141 - 4479 (-)
Type: TC
Location: 4141 - 4479 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_18886_6
Type: TF
Location: 4694 - 5698 (-)
Type: TF
Location: 4694 - 5698 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_18886_7
Type: TC
Location: 6056 - 7831 (+)
Type: TC
Location: 6056 - 7831 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_18886_8
Type: CAZyme
Location: 7898 - 9337 (+)
Type: CAZyme
Location: 7898 - 9337 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_18886_9
Type: TF
Location: 9604 - 10614 (-)
Type: TF
Location: 9604 - 10614 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_18886_10
Type: TC
Location: 10890 - 12668 (+)
Type: TC
Location: 10890 - 12668 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_18886_11
Type: CAZyme
Location: 12745 - 14166 (+)
Type: CAZyme
Location: 12745 - 14166 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_18886_12
Type: TF
Location: 14673 - 15437 (-)
Type: TF
Location: 14673 - 15437 (-)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_18886_13
Type: sulfatase
Location: 15644 - 16696 (+)
Type: sulfatase
Location: 15644 - 16696 (+)
Gene ID: BackhedF_2015_ERR525949_bin.8_k119_18886_14
Type: TC
Location: 17023 - 17505 (-)
Type: TC
Location: 17023 - 17505 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900540945
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.