Cluster: BackhedF_2015_ERR525938_bin.5_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525938_bin.5
- CGC Family ID: CGCFAM_07591
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525938_bin.5_k119_870 | BackhedF_2015_ERR525938_bin.5_k119_870_114 | 110635 | 111762 | + | GH102 |
| TC | BackhedF_2015_ERR525938_bin.5_k119_870 | BackhedF_2015_ERR525938_bin.5_k119_870_115 | 111762 | 112523 | + | 3.A.16.1.3 |
| TC | BackhedF_2015_ERR525938_bin.5_k119_870 | BackhedF_2015_ERR525938_bin.5_k119_870_116 | 112691 | 113671 | + | 3.A.1.15.5 |
| pfam | BackhedF_2015_ERR525938_bin.5_k119_870 | BackhedF_2015_ERR525938_bin.5_k119_870_117 | 113791 | 115926 | + | UPF0020 | THUMP | Cons_hypoth95 | Methyltrans_SAM | RlmL_1st |
| TC | BackhedF_2015_ERR525938_bin.5_k119_870 | BackhedF_2015_ERR525938_bin.5_k119_870_118 | 115962 | 117866 | - | 2.A.37.1.2 |
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_870_114
Type: CAZyme
Location: 110635 - 111762 (+)
Type: CAZyme
Location: 110635 - 111762 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_870_115
Type: TC
Location: 111762 - 112523 (+)
Type: TC
Location: 111762 - 112523 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_870_116
Type: TC
Location: 112691 - 113671 (+)
Type: TC
Location: 112691 - 113671 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_870_117
Type: pfam
Location: 113791 - 115926 (+)
Type: pfam
Location: 113791 - 115926 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_870_118
Type: TC
Location: 115962 - 117866 (-)
Type: TC
Location: 115962 - 117866 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525938_bin.5_k119_870_114 | vegetarian > omnivore | 1.22270 | 0.01033 |
| BackhedF_2015_ERR525938_bin.5_k119_870_115 | vegan > omnivore | 1.38899 | 0.00581 |
| BackhedF_2015_ERR525938_bin.5_k119_870_115 | vegetarian > omnivore | 1.51096 | 0.01033 |
| BackhedF_2015_ERR525938_bin.5_k119_870_117 | vegan > omnivore | 1.31425 | 0.00581 |
| BackhedF_2015_ERR525938_bin.5_k119_870_117 | vegetarian > omnivore | 1.35061 | 0.01033 |
| BackhedF_2015_ERR525938_bin.5_k119_870_118 | vegetarian > omnivore | 1.05234 | 0.01033 |