Cluster: BackhedF_2015_ERR525938_bin.5_CGC22
🧬 Cluster Details
- Gene Count: 3
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525938_bin.5
- CGC Family ID: CGCFAM_00559
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_203 | 194072 | 194455 | - | 1.A.22.1.1 |
| TC | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_204 | 194534 | 195910 | - | 2.A.38.1.1 |
| CAZyme | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_205 | 195907 | 196722 | - | GT2 |
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_203
Type: TC
Location: 194072 - 194455 (-)
Type: TC
Location: 194072 - 194455 (-)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_204
Type: TC
Location: 194534 - 195910 (-)
Type: TC
Location: 194534 - 195910 (-)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_205
Type: CAZyme
Location: 195907 - 196722 (-)
Type: CAZyme
Location: 195907 - 196722 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525938_bin.5_k119_3570_203 | vegan > omnivore | 1.65403 | 0.00581 |
| BackhedF_2015_ERR525938_bin.5_k119_3570_203 | vegetarian > omnivore | 3.00362 | 0.01033 |
| BackhedF_2015_ERR525938_bin.5_k119_3570_203 | vegetarian > vegan | 1.34959 | 0.03188 |
| BackhedF_2015_ERR525938_bin.5_k119_3570_204 | vegetarian > omnivore | 1.32094 | 0.00711 |
| BackhedF_2015_ERR525938_bin.5_k119_3570_205 | vegan > omnivore | 1.59303 | 0.00581 |