Cluster: BackhedF_2015_ERR525938_bin.5_CGC20
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: BackhedF_2015_ERR525938_bin.5
- CGC Family ID: CGCFAM_01193
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_97 | 102557 | 103447 | + | 3.A.1.14.1 |
| TC | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_98 | 103447 | 104436 | + | 3.A.1.14.1 |
| TC | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_99 | 104436 | 105419 | + | 3.A.1.14.1 |
| TC | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_100 | 105419 | 106186 | + | 3.A.1.14.8 |
| TC | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_101 | 106397 | 106774 | + | 1.B.55.1.3 |
| TC | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_102 | 106868 | 108814 | + | 1.B.55.1.3 |
| CAZyme | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_103 | 108836 | 110752 | + | CE4 | GH153 |
| CAZyme | BackhedF_2015_ERR525938_bin.5_k119_3570 | BackhedF_2015_ERR525938_bin.5_k119_3570_104 | 110762 | 112003 | + | GT2 |
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_97
Type: TC
Location: 102557 - 103447 (+)
Type: TC
Location: 102557 - 103447 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_98
Type: TC
Location: 103447 - 104436 (+)
Type: TC
Location: 103447 - 104436 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_99
Type: TC
Location: 104436 - 105419 (+)
Type: TC
Location: 104436 - 105419 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_100
Type: TC
Location: 105419 - 106186 (+)
Type: TC
Location: 105419 - 106186 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_101
Type: TC
Location: 106397 - 106774 (+)
Type: TC
Location: 106397 - 106774 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_102
Type: TC
Location: 106868 - 108814 (+)
Type: TC
Location: 106868 - 108814 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_103
Type: CAZyme
Location: 108836 - 110752 (+)
Type: CAZyme
Location: 108836 - 110752 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3570_104
Type: CAZyme
Location: 110762 - 112003 (+)
Type: CAZyme
Location: 110762 - 112003 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525938_bin.5_k119_3570_97 | vegetarian > omnivore | 1.43202 | 0.01033 |
| BackhedF_2015_ERR525938_bin.5_k119_3570_98 | vegetarian > omnivore | 1.38753 | 0.01033 |