Cluster: BackhedF_2015_ERR525938_bin.5_CGC17
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: BackhedF_2015_ERR525938_bin.5
- CGC Family ID: CGCFAM_05004
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | BackhedF_2015_ERR525938_bin.5_k119_3023 | BackhedF_2015_ERR525938_bin.5_k119_3023_7 | 7404 | 9803 | + | GT51 |
| TC | BackhedF_2015_ERR525938_bin.5_k119_3023 | BackhedF_2015_ERR525938_bin.5_k119_3023_8 | 10023 | 11927 | + | 2.A.108.2.10 |
| TC | BackhedF_2015_ERR525938_bin.5_k119_3023 | BackhedF_2015_ERR525938_bin.5_k119_3023_9 | 11956 | 12477 | + | 2.A.108.2.10 |
| pfam | BackhedF_2015_ERR525938_bin.5_k119_3023 | BackhedF_2015_ERR525938_bin.5_k119_3023_10 | 12593 | 13987 | + | YHS | FtrD-like |
| TC | BackhedF_2015_ERR525938_bin.5_k119_3023 | BackhedF_2015_ERR525938_bin.5_k119_3023_11 | 13987 | 15327 | + | 3.A.1.122.8 |
| pfam | BackhedF_2015_ERR525938_bin.5_k119_3023 | BackhedF_2015_ERR525938_bin.5_k119_3023_12 | 15314 | 16447 | + | FtsX | MacB_PCD |
| TC | BackhedF_2015_ERR525938_bin.5_k119_3023 | BackhedF_2015_ERR525938_bin.5_k119_3023_13 | 16449 | 17120 | + | 3.A.1.122.8 |
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3023_7
Type: CAZyme
Location: 7404 - 9803 (+)
Type: CAZyme
Location: 7404 - 9803 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3023_8
Type: TC
Location: 10023 - 11927 (+)
Type: TC
Location: 10023 - 11927 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3023_9
Type: TC
Location: 11956 - 12477 (+)
Type: TC
Location: 11956 - 12477 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3023_10
Type: pfam
Location: 12593 - 13987 (+)
Type: pfam
Location: 12593 - 13987 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3023_11
Type: TC
Location: 13987 - 15327 (+)
Type: TC
Location: 13987 - 15327 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3023_12
Type: pfam
Location: 15314 - 16447 (+)
Type: pfam
Location: 15314 - 16447 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_3023_13
Type: TC
Location: 16449 - 17120 (+)
Type: TC
Location: 16449 - 17120 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Pasteurellaceae
Genus
Haemophilus_D
Species
Haemophilus_D parainfluenzae
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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Differentially Abundant Genes
| Gene ID | Condition Pair | log2FC | FDR P-value |
|---|---|---|---|
| BackhedF_2015_ERR525938_bin.5_k119_3023_8 | vegetarian > vegan | 1.14824 | 0.03188 |
| BackhedF_2015_ERR525938_bin.5_k119_3023_10 | vegetarian > vegan | 1.83967 | 0.01135 |