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Cluster: BackhedF_2015_ERR525938_bin.5_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC BackhedF_2015_ERR525938_bin.5_k119_2431 BackhedF_2015_ERR525938_bin.5_k119_2431_35 32124 33968 - 3.A.1.106.2
TF BackhedF_2015_ERR525938_bin.5_k119_2431 BackhedF_2015_ERR525938_bin.5_k119_2431_36 34047 34937 - HTH_AraC | HTH_AraC
pfam BackhedF_2015_ERR525938_bin.5_k119_2431 BackhedF_2015_ERR525938_bin.5_k119_2431_37 35040 35384 + CMD
CAZyme BackhedF_2015_ERR525938_bin.5_k119_2431 BackhedF_2015_ERR525938_bin.5_k119_2431_38 35455 36510 - GT9
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_2431_35
Type: TC
Location: 32124 - 33968 (-)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_2431_36
Type: TF
Location: 34047 - 34937 (-)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_2431_37
Type: pfam
Location: 35040 - 35384 (+)
Gene ID: BackhedF_2015_ERR525938_bin.5_k119_2431_38
Type: CAZyme
Location: 35455 - 36510 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
BackhedF_2015_ERR525938_bin.5_k119_2431_35 vegetarian > vegan 1.09305 0.03188
BackhedF_2015_ERR525938_bin.5_k119_2431_36 vegetarian > vegan 1.21556 0.03188
BackhedF_2015_ERR525938_bin.5_k119_2431_37 vegan > omnivore 1.22367 0.00581
BackhedF_2015_ERR525938_bin.5_k119_2431_37 vegetarian > omnivore 1.42174 0.01033
BackhedF_2015_ERR525938_bin.5_k119_2431_38 vegetarian > omnivore 1.05098 0.01033
BackhedF_2015_ERR525938_bin.5_k119_2431_38 vegetarian > vegan 1.25556 0.03188

🧭 Explore Read Mapping of CGC

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