Cluster: BackhedF_2015_ERR525908_bin.3_CGC8
🧬 Cluster Details
- Gene Count: 8
- CAZyme Count: 2
- Substrate:
- Genome ID: BackhedF_2015_ERR525908_bin.3
- Continent: Europe
- Source Study: Zeng et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | BackhedF_2015_ERR525908_bin.3_k119_9478 | BackhedF_2015_ERR525908_bin.3_k119_9478_5 | 7388 | 9838 | - | 4.A.1.1.8 |
| TF | BackhedF_2015_ERR525908_bin.3_k119_9478 | BackhedF_2015_ERR525908_bin.3_k119_9478_6 | 10068 | 10787 | + | GntR |
| TC | BackhedF_2015_ERR525908_bin.3_k119_9478 | BackhedF_2015_ERR525908_bin.3_k119_9478_7 | 11094 | 12410 | + | 3.A.1.1.45 |
| TC | BackhedF_2015_ERR525908_bin.3_k119_9478 | BackhedF_2015_ERR525908_bin.3_k119_9478_8 | 12498 | 13352 | + | 3.A.1.1.45 |
| TC | BackhedF_2015_ERR525908_bin.3_k119_9478 | BackhedF_2015_ERR525908_bin.3_k119_9478_9 | 13352 | 14191 | + | 3.A.1.1.45 |
| TC | BackhedF_2015_ERR525908_bin.3_k119_9478 | BackhedF_2015_ERR525908_bin.3_k119_9478_10 | 14260 | 15459 | + | 3.A.1.1.22 |
| CAZyme | BackhedF_2015_ERR525908_bin.3_k119_9478 | BackhedF_2015_ERR525908_bin.3_k119_9478_11 | 15916 | 18183 | - | GT35 |
| CAZyme | BackhedF_2015_ERR525908_bin.3_k119_9478 | BackhedF_2015_ERR525908_bin.3_k119_9478_12 | 18312 | 19817 | - | GH77 |
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_9478_5
Type: TC
Location: 7388 - 9838 (-)
Type: TC
Location: 7388 - 9838 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_9478_6
Type: TF
Location: 10068 - 10787 (+)
Type: TF
Location: 10068 - 10787 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_9478_7
Type: TC
Location: 11094 - 12410 (+)
Type: TC
Location: 11094 - 12410 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_9478_8
Type: TC
Location: 12498 - 13352 (+)
Type: TC
Location: 12498 - 13352 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_9478_9
Type: TC
Location: 13352 - 14191 (+)
Type: TC
Location: 13352 - 14191 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_9478_10
Type: TC
Location: 14260 - 15459 (+)
Type: TC
Location: 14260 - 15459 (+)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_9478_11
Type: CAZyme
Location: 15916 - 18183 (-)
Type: CAZyme
Location: 15916 - 18183 (-)
Gene ID: BackhedF_2015_ERR525908_bin.3_k119_9478_12
Type: CAZyme
Location: 18312 - 19817 (-)
Type: CAZyme
Location: 18312 - 19817 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Actinomycetota
Class
Coriobacteriia
Order
Coriobacteriales
Family
Coriobacteriaceae
Genus
Collinsella
Species
Collinsella sp900755685
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.